BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314128
Length=1221
Score E
Sequences producing significant alignments: (Bits) Value
AT1G44318.1 | Symbols: hemb2 | Aldolase superfamily protein | c... 1851 0.0
> AT1G44318.1 | Symbols: hemb2 | Aldolase superfamily protein |
chr1:16831016-16833916 FORWARD LENGTH=1221
Length=1221
Score = 1851 bits (1002), Expect = 0.0
Identities = 1152/1225 (94%), Gaps = 8/1225 (1%)
Strand=Plus/Plus
Query 1 ATGACGTCATCCATGTTTAGATCACCTTGCAAGATTCCGTCGGTGAAAGGTTTTGAGCAA 60
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGACGTCATCCATGTTTCGATCTCCTTGCAAGATTCCGTCGGTGAAAGGTTTTGAGCAA 60
Query 61 AAGAGCTACGTAGGCCTTAAAGCAGCTTCGTATAACGTCAGAGTCAACTCTTTTAAAAGC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAGAGCTACGTAGGCCTTAAAGCAGCTTCGTATAACGTCAGAGTCAACTCTTTTAAAAGC 120
Query 121 AGTGAAGTTGCTAGTCAACTGCAAAAGATCGACTCGACCTTGATATGGCCGGTAAATGCT 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGTGAAGTTGCTAGTCAACTCCAAAAGATCGACTCGACCTTGATATGGCCGGTAAATGCT 180
Query 181 CCCGAGGCGCCTCCATTGCCGAGTAAACTAGCCGA-ACCTGTGATTGACCAGCCTCTTCA 239
| ||||||||||||| | |||||||||| |||| | |||| ||||||| |||||||||||
Sbjct 181 CTCGAGGCGCCTCCAGTCCCGAGTAAACCAGCC-ACACCTCTGATTGATCAGCCTCTTCA 239
Query 240 GCTAAGCCGACGTGCACGTCGTAACCGAAAGTGCCCTTCCCAGAGAGCTGCTTTTCAAGA 299
|||||||||||| |||||||||||||||||||||||| ||||||||||||| || |||||
Sbjct 240 GCTAAGCCGACGCGCACGTCGTAACCGAAAGTGCCCTACCCAGAGAGCTGCCTTCCAAGA 299
Query 300 GACTAATATCTCTCCAGCAAATTTAATATACCCCCTCTTCATTCACGAAGGTGAGGTAGA 359
||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 300 GACTAATATCTCTCCTGCAAATTTCATATACCCTCTCTTCATTCACGAAGGTGAGGTAGA 359
Query 360 CATTCCGATAACAACGATGCCTGGACGTTACATGCTTGGCTGGAGACACGGCCTCAACGA 419
|||||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 360 CATTCCCATAACATCGATGCCTGGACGTTACATGCTTGGCTGGAGACACGGCCTCATTGA 419
Query 420 AGAAGTTGCAAGAGCACGAGATGTTGGTGTGAATAGCATAAAGTTGTATCCTAAAGTTCC 479
|||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 420 AGAAGTTGCAAGGGCACTAGATGTTGGTGTGAATAGCGTAAAGTTGTATCCTAAAGTTCC 479
Query 480 GGAAGC-TAAAAAGTCTCCAACAGGGGAAGAGGCATTTAACGACAACGGTCTAGTACCTC 538
|||||| | ||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 480 GGAAGCGTTAAA-GTCTCCAACAGGGGAAGAGGCATTTAACGACAACGGTCTAATACCTA 538
Query 539 GGACAGTTCGTCTTCTCAAGGACAGGTTCCCTGATCTTGTTATCTACACTGATGTTAATT 598
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
Sbjct 539 GGACAGTTCGTCTTCTCAAGGACAGATTCCCTGATCTTGTTATCTACACTGATGTCAACT 598
Query 599 TTGATGAGTACTCAACAACTGGGCACGGTGGGATCGTAAGAGAAGATGGCGTGATATTGA 658
||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
Sbjct 599 TTGATGAGTACTCAACAACTGGGCATGGTGGGATCGTAGGAGAAGATGGCGTGATATTAA 658
Query 659 ATGATGAAACAATTCACCAATTGCGGAAACAAGCAGTTTCTCAGGCACGAGCTGGAGCAG 718
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 659 ATGATGAAACAATTCACCAATTGCGGAAACAAGCAGTTTCTCAGGCCCGAGCTGGAGCAG 718
Query 719 ATGTTGTATGTACGAGTGAGATGTTGGATGGTCGTGTAGGCGCGGTTCGAGCAGCTCTAG 778
||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 719 ATGTTGTTTGTACGAGTGAGATGTTGGATGGTCGCGTAGGCGCGGTTCGTGCAGCTCTAG 778
Query 779 ATGCTGAGGGCTTTCAACATGTGTCCATTATGTCTTACTCTGTCAAGTATACAAGTTCAT 838
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 ATGCTGAGGGATTTCAAGATGTGTCCATTATGTCTTACTCTGTCAAGTATACAAGTTCAT 838
Query 839 TATATGGCCGTTTTCGCAAAGTGGAATTGGACAAGAAAACTTATCAGATAAACCCGGCAA 898
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 839 TATATGGCCGTTTTCGCAAAGTACAATTGGACAAGAAAACTTATCAGATAAACCCAGCAA 898
Query 899 ATTCAAGAGAGGCATTGCTCGAAGCACGAGAAGACGAAGCTGAAGGAGCTGATATCCTAA 958
||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||
Sbjct 899 ATTCAAGAGAGGCATTGCTAGAAGCACGAGAAGACGAAGCGGAAGGAGCTGATATCTTAA 958
Query 959 TGGTGAAGCCAGCGCTGCTATCTCTCGATATCATACGCTTATTGAAGGACCAAACTCTT- 1017
||||||||||||| || | |||||||||||||||||||||||||||| |||||||| ||
Sbjct 959 TGGTGAAGCCAGCACTCCCATCTCTCGATATCATACGCTTATTGAAGAACCAAACT-TTG 1017
Query 1018 TTACCCATTGGAGCTTGTCAGGTTTCTGGTGAGTACTCCATGATCAAAGCTGCTGGACTT 1077
|| || ||||||||||| || ||||||||||| ||||| |||||||||||||||||||||
Sbjct 1018 TTGCCTATTGGAGCTTGCCAAGTTTCTGGTGAATACTCTATGATCAAAGCTGCTGGACTT 1077
Query 1078 CTCAAGATGATCGACGAAGAAAAAGTTATGATGGAGTCATTGATCTGTATGCGCCGAGCT 1137
|||||||||||||| ||||||||||||||||||||||||||| | || || |||||||||
Sbjct 1078 CTCAAGATGATCGATGAAGAAAAAGTTATGATGGAGTCATTGTTATGCATCCGCCGAGCT 1137
Query 1138 GGTGCAGATGTTATTCTTACATACTTTGCTCTTCAAGCTGCTACAATATTATGCGGCCAC 1197
||||||||| | |||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 1138 GGTGCAGATCTCATTCTTACATACTTTGCTCTTCAAGCTGCTACAAAATTATGCGGCGAA 1197
Query 1198 AATAAACGATTTA-TAGCCAACTAG 1221
||||||||||||| | ||||||||
Sbjct 1198 AATAAACGATTTAGTT-CCAACTAG 1221
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59989651275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5