BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314132
Length=816
Score E
Sequences producing significant alignments: (Bits) Value
AT1G44542.1 | Symbols: | Cyclase family protein | chr1:1686497... 1197 0.0
AT4G34180.1 | Symbols: | Cyclase family protein | chr4:1636935... 730 0.0
> AT1G44542.1 | Symbols: | Cyclase family protein | chr1:16864970-16866605
REVERSE LENGTH=1023
Length=1023
Score = 1197 bits (648), Expect = 0.0
Identities = 768/824 (93%), Gaps = 16/824 (2%)
Strand=Plus/Plus
Query 1 ATGTACCATCTCCTCATCATTGTCACTATACTCTCCTTCTCTTCAATTCCCATCGCCTTC 60
|||||||||||||| |||||| |||||| ||||||||||||||||||| ||| |||||
Sbjct 33 ATGTACCATCTCCTTATCATTATCACTACACTCTCCTTCTCTTCAATTAACATAACCTTC 92
Query 61 GCCGTCGATGAAGCTTTCCCTTCAGGTCCAACTACCTTCAGCGTCGCAACG--A-AACAC 117
|||||||||||||||||||||||| ||| ||||||||||||||||||||| | |||||
Sbjct 93 GCCGTCGATGAAGCTTTCCCTTCAATTCCCACTACCTTCAGCGTCGCAACGAAACAACAC 152
Query 118 TCCGACGATCAAAAGCCAATCCGCCGA-GAAGTTTATGGCGGAGAAAGGAAGATATTCGA 176
| ||||| | |||| ||||||| || | |||||||||| ||||||||||||||||| |||
Sbjct 153 TACGACG-T-AAAA-CCAATCCACC-ATGAAGTTTATGACGGAGAAAGGAAGATATACGA 208
Query 177 CATCAGCCACCAGTACACACCAGAGCTGCCAGTTTGGGAGTCTTCAGAAGGATTA-GGAA 235
|||||||||||||||||| || ||| |||| ||||||||||||||||||||| || ||||
Sbjct 209 CATCAGCCACCAGTACACGCCGGAGTTGCCGGTTTGGGAGTCTTCAGAAGGACTAGGGAA 268
Query 236 GGTTTATGAGACTTGCCGTGAGCATGAAGAATGGATCCG-TCGCTAATATCTCGAAGATG 294
||| | |||||||||||||| |||||||||||||||| | ||||||||||||||||||
Sbjct 269 -CTTTCTTAGACTTGCCGTGAGTATGAAGAATGGATCCGAT-GCTAATATCTCGAAGATG 326
Query 295 AAACTATCTGTTCACTCTGGAACTCATGTTGATGCTCCAGGCCATTTCCATGAACATTAT 354
|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 327 GAACTATCTGTTCACTCTGGAACTCATGTTGATGCACCAGGCCATTTCCATGACCATTAT 386
Query 355 TATGATTCTGGTTTTGATTCTGATTCACTTGATCTTCAAATCCTTAACGGTCCTGCTTTA 414
||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 387 TATGAGTCTGGTTTTGATACTGATTCACTTGATCTTCAAATCCTTAATGGTCCTGCTTTA 446
Query 415 TTGGTTGATGTTCCAAGAGATAAGAACATTTCAGCTGAGGTTATGAAATCACTTCATATT 474
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 447 TTGGTTGATGTTCCAAGAGATAAGAACATTTCAGCTGAGGTTATGAAATCACTACATATT 506
Query 475 CCAA-AGGGAATCCGTCGTGTGCTCTTTAAAACTTTGAACACGGATAGGCGGCTTATGTT 533
|||| |||| ||||||||||| ||||||||||| |||||||| |||||| ||||||||||
Sbjct 507 CCAAGAGGG-ATCCGTCGTGTTCTCTTTAAAACATTGAACACTGATAGGAGGCTTATGTT 565
Query 534 TAAGAAAGAATTTGATTCAAGCTTTGTTGGGTTCT-TGATCGATGGGGCGAAATGGTTGG 592
||||||||||||||||||||||||||| ||||| | || |||||||||||||||||||||
Sbjct 566 TAAGAAAGAATTTGATTCAAGCTTTGTCGGGTT-TATGGTCGATGGGGCGAAATGGTTGG 624
Query 593 TTGAGAATACAGACATCAAACTTGTTGGGCTTGATTATCTTTCATTTGCTGCTTATGATG 652
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 625 TTGAAAATACAGACATCAAACTTGTTGGGCTTGATTATCTTTCATTTGCTGCTTATGATG 684
Query 653 AAGCACCTGCGACGCATAGGTTTATACTTGAACGACGGGATATAATCCCTGTCGAAGCGC 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 685 AAGCACCTGCGACGCATAGGTTTATACTTGAACGACGGGATATAATCCCTGTCGAAGCGC 744
Query 713 TGAAGCTGGATGATGTGGAGGTAGGAATGTACTCGCTTCATTGCTTACCGTTGAGATTGG 772
||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 745 TGAAGCTGGATGACGTGGAGGTAGGAATGTACACGCTTCATTGCTTACCGTTAAGATTGG 804
Query 773 TTGGAGCGGAAGGAGCACCAACGAGATGCATTCTCATCAAGTGA 816
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 805 TTGGAGCGGAAGGAGCACCAACGAGATGCATTCTCATCAAGTGA 848
> AT4G34180.1 | Symbols: | Cyclase family protein | chr4:16369357-16371430
REVERSE LENGTH=1419
Length=1419
Score = 730 bits (395), Expect = 0.0
Identities = 607/708 (86%), Gaps = 20/708 (3%)
Strand=Plus/Plus
Query 119 CCGACGAT-CAAAAGCCAATCCGCCGAGAAGTTTATGGCGGAGAAAGG-AAGATATTCGA 176
|||||||| | ||| ||||||||||| || || || || || ||| ||||||| |||
Sbjct 118 CCGACGATCCCAAA-CCAATCCGCCGTGAGGTCTA---CGAAG-GAGGTAAGATATACGA 172
Query 177 CATCAGCCACCAG-TACACACCAGAGCTGCCAGTTTGGGAGTCTTCAGAAGGATTAGG-A 234
||||||||| | | ||||| || ||| | |||| |||||| ||||| |||||||| || |
Sbjct 173 CATCAGCCATC-GTTACACGCCGGAGATTCCAGCTTGGGAATCTTCGGAAGGATTGGGAA 231
Query 235 AG--GTTTATGAGACTT-GCCGTGAGCATGAAGAATGGATCCGTCGCTAATATCTCGAAG 291
|| ||| || || || |||| ||| |||||||||||||| ||||||| | ||| ||
Sbjct 232 AGACGTTCCTGCGA-TTAGCCGCGAGTATGAAGAATGGATCATTCGCTAACGTATCGGAG 290
Query 292 ATGAAACTATCTGTTCACTCTGGAACTCATGTTGATGCTCCAGGCCA-TTTCCATGA-AC 349
||||||||||||||||||||||||||||| || ||||||||||| || ||| || |
Sbjct 291 ATGAAACTATCTGTTCACTCTGGAACTCACGTGGATGCTCCAGGTCACTTT-TGGGATA- 348
Query 350 ATTATTATGATTCTGGTTTTGATTCTGATTCACTTGATCTTCAAATCCTTAACGGTCCTG 409
||||||| ||| ||||||||||| ||||||| |||||||| ||| |||| || |||||||
Sbjct 349 ATTATTACGATGCTGGTTTTGATACTGATTCGCTTGATCTCCAAGTCCTAAATGGTCCTG 408
Query 410 CTTTATTGGTTGATGTTCCAAGAGATAAGAACATTTCAGCTGAGGTTATGAAATCACTTC 469
|||| |||||||||||||| ||||||||||||||| | |||||||| ||| |||||||||
Sbjct 409 CTTTGTTGGTTGATGTTCCGAGAGATAAGAACATTACTGCTGAGGTAATGGAATCACTTC 468
Query 470 ATATTCCAAAG-GGAATCCGTCGTGTGCTCTTTAAAACTTTGAACACGGATAGGCGGCTT 528
||| | ||||| ||| | |||||||||||||||| ||| | ||||| || | |||||||
Sbjct 469 ATA-TACAAAGAGGAGTTCGTCGTGTGCTCTTTAGAACATCCAACACCGACAAGCGGCTT 527
Query 529 ATGTTTAAGAAAGAATTTGATTCAAGCTTTGTTGGGTTCTTGATCGATGGGGCGAAATGG 588
|||||||||||||| |||||||||||||||| ||||||| ||| ||||||||| ||||||
Sbjct 528 ATGTTTAAGAAAGAGTTTGATTCAAGCTTTGCTGGGTTCATGACCGATGGGGCTAAATGG 587
Query 589 TTGGTTGAGAATACAGACATCAAACTTGTTGGGCTTGATTATCTTTCATTTGCTGCTTAT 648
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 588 TTGGTTGAGAATACAGACATCAAACTTATTGGGCTTGATTATCTTTCATTTGCTGCTTTT 647
Query 649 GATGAAGCACCTGCGACGCATAGGTTTATACTTGAACGACGGGATATAATCCCTGTCGAA 708
|| ||| ||||||| || || ||| |||||||| || |||||||||||||||| || |||
Sbjct 648 GAGGAATCACCTGCAACACACAGGGTTATACTTAAAGGACGGGATATAATCCCAGTGGAA 707
Query 709 GCGCTGAAGCTGGATGATGTGGAGGTAGGAATGTACTCGCTTCATTGCTTACCGTTGAGA 768
|||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||
Sbjct 708 GCGCTGAAGCTGGATGGTGTGGAGGTAGGAACATACTCGCTTCATTGCTTACCGCTGAGA 767
Query 769 TTGGTTGGAGCGGAAGGAGCACCAACGAGATGCATTCTCATCAAGTGA 816
|| |||||||||||||||||||| || |||||||||||||||||||||
Sbjct 768 TTAGTTGGAGCGGAAGGAGCACCGACAAGATGCATTCTCATCAAGTGA 815
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39735210277
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5