BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314163
Length=1374
Score E
Sequences producing significant alignments: (Bits) Value
AT1G45233.2 | Symbols: THO5, AtTHO5 | THO complex, subunit 5 |... 1940 0.0
> AT1G45233.2 | Symbols: THO5, AtTHO5 | THO complex, subunit 5
| chr1:17152934-17154843 FORWARD LENGTH=1562
Length=1562
Score = 1940 bits (1050), Expect = 0.0
Identities = 1263/1365 (93%), Gaps = 17/1365 (1%)
Strand=Plus/Plus
Query 1 ATGCTATCGGAGATAGCGAAAGACACGGTGGCTACGGCGGAGAAATCACCGCTTGAGCTA 60
|||| ||||||||| |||| |||||||||||| ||||||||||||||||| || ||||||
Sbjct 23 ATGCAATCGGAGATGGCGATAGACACGGTGGCCACGGCGGAGAAATCACCACTAGAGCTA 82
Query 61 CTTCAAGAAACCAAAGCCTCCGTCGAAGCAATCATCGCAAAGCTCCTCTCAATAAAGCAA 120
|||||| |||||||||||||||||||||||||||| |||||| | ||||| || ||||||
Sbjct 83 CTTCAACAAACCAAAGCCTCCGTCGAAGCAATCATAGCAAAGATGCTCTCCATCAAGCAA 142
Query 121 CAAGGAAACCCC-AAATCTGAGAATCGAGAACTCCTCACTCAGATGTTCCTCAACTTCAT 179
||||| |||||| ||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 143 CAAGG-AACCCCTAAATCCGAGAATCGAGAACTCCTCACTCAGATGTTTCTCAACTTCAT 201
Query 180 CAATCTCCGTCAAGCAAATCGCGCGATTCTTATAGAAGAGGAGAAAACGAAAACTGAGAC 239
|||||| |||||||| |||||| |||||||||||||||| |||||| || ||| || ||
Sbjct 202 CAATCTTCGTCAAGCGAATCGCTCGATTCTTATAGAAGAAGAGAAAGTGAGAACAGAAAC 261
Query 240 GGAATTAGCAAAATCTCCGGTGGATTTTACGACATTGGAGCTTCACAATCTCATGTATGA 299
|||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 262 GGAAATAGCAAAATCTCCGGTGGATTTCACGACGTTGGAGCTTCACAATCTCATGTATGA 321
Query 300 GAAGAGTCATTACCTCAAAGCTAATAAAGCTAGTAGAGATTTCAAATCTAAGTATCCAAA 359
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 322 GAAGAGTCATTACCTCAAAGCTAATAAAGCTAGTAGAGATTTCAAATCTAGGTATCCAAA 381
Query 360 CATCGATCTCATATCTGAACAAGACTTCTTCAGTGATGCTCCTGAAGCTATCAAATCTCA 419
||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 382 CATCGATCTCATATCCGAACAAGACTTCTTCAGTGATGCTCCCGAAGCAATCAAATCTCA 441
Query 420 AACGTTATCAAATGATAGTTCTCATGATTTGATGCTTAAAAGACTCAACTTTGAGCTTCA 479
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 442 AACGTTATCAAATGATAGTTCTCATGATTTGATGCTTAAAAGACTCAATTTTGAGCTTCA 501
Query 480 TCAGAGGAAAGAACTATGCAAGCTTAGAGTGAGGTTGGAGCAACAGAAGAAGTGTTTGCT 539
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 502 TCAGAGGAAAGAGCTATGCAAGCTTAGAGTGAGGTTGGAGCAACAGAAGAAGAGTTTACT 561
Query 540 TGAAACG-AATGCGGAGCGGAATAAGTTTCTGTCGAGTCTTCCGGTGCATCTCAAATCTC 598
||||| | ||||||||| |||| ||||||||||| |||||||| ||||||||||||||||
Sbjct 562 TGAAA-GTAATGCGGAGAGGAACAAGTTTCTGTCAAGTCTTCCAGTGCATCTCAAATCTC 620
Query 599 TAAAGAAAGCATCTTTGCCAGTACAGAGCCAGTTGAGTTTGCAGAATCAGAAGAAGCTCA 658
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 621 TAAAGAAAGCATCTTTGCCAGTACAGAGCCAGTTGAGTTTGCAGAATCAGAAGAAGCTGA 680
Query 659 AGTATCATAATCTAGCTGAGCTTCTTCCTCCGCCGCTTTATGTTATATATTCTCAGTTCA 718
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 681 AGTATCATAATCTAGCTGAGCTTCTTCCTCCGCCGCTTTATGTTATATATTCGCAGTTCA 740
Query 719 TGGCACAAAAGGAAGCTTTTGAAGAGAACATCGATGTCGAGGTATCTGGGAGTCTTAATG 778
|||||| ||||||||||| |||||||| |||||||| |||||||||||||||||||| |
Sbjct 741 TGGCACTGAAGGAAGCTTTCGAAGAGAATATCGATGTTGAGGTATCTGGGAGTCTTAAGG 800
Query 779 ATGCTCAAAGTTATGCGCGGCAGCAAGCAGAACAGAACTCAGAGAATCTAAGAATGGAGA 838
||||||||| ||||||||||||||||||||||||||||||||||| ||||||| | |||
Sbjct 801 ATGCTCAAACTTATGCGCGGCAGCAAGCAGAACAGAACTCAGAGAGTCTAAGATTAGAGG 860
Query 839 TTGATGATGAAGATAATGATGGAA-AAAGGCAAAGGAAGCGACCCAAGAAAGAAGGGTT- 896
||| | || | ||||| || ||||||||||||| |||| |||||||| |||||
Sbjct 861 TTG--G-TG----T--TGATG-AAGAAAGGCAAAGGAAACGACTCAAGAAAGT-GGGTTC 909
Query 897 TGATGAGGGAGGACTATATGAAGTTCATCCTCTTAATGTTGTCCTTCATGTTTATGATGA 956
||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 910 TGATGAGGGAGGAGTATATCAAGTTCATCCTCTTAAAGTTGTCCTTCATGTTTATGATGA 969
Query 957 TGAGGTTCCAGATCCGAAGTCTCATGATCTTATCATGCTCAAGTTTGAGTACTTGTTGAA 1016
||| || |||||||||| |||||||| ||| ||||||||||||||||||||||||||||
Sbjct 970 CGAGATTACAGATCCGAAATCTCATGAACTTGTCATGCTCAAGTTTGAGTACTTGTTGAA 1029
Query 1017 GTTGAATGTTGTTTGTGTTGGCATTGAAGAGTCACAAGATGGACTTGAGAAAAATATACT 1076
|||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1030 GTTGAATGTTGTATGTGTTGGCATTGAAGAGTCTGAGGATGGACTTGAGAAAAATATACT 1089
Query 1077 CTGTAACATATTTCCAGATGATTCTGGACTTGAGCCTCCCCATCAGTCAGCCAAGCTCAT 1136
|||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1090 ATGTAACTTATTTCCAGACGATTCTGGACTTGAGCCTCCTCATCAGTCAGCCAAGCTCAT 1149
Query 1137 TCTGGGCAATGATCATGCATTTGATGAGAGCAGAACTTCGAGGCCATACAAGTGGGCACA 1196
||| ||||| ||||||| |||||| | |||||||||||||||||||| |||||||||||
Sbjct 1150 TCTTGGCAACGATCATGTGTTTGATAAAAGCAGAACTTCGAGGCCATATAAGTGGGCACA 1209
Query 1197 ACATTTGGCGGGGATTGAGATTTTACCTGAAATGTCACCATTTTTTACTGACAAGGATAT 1256
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1210 ACATTTGGCGGGGATTGAGACTTTACCTGAAATGTCACCATTTTTTACTGACAAGGATAT 1269
Query 1257 TCAAAATAGTGATACAGCTAAAGACTATGCTTCTGCATCTGATCACCGCAATGTGCAAAC 1316
|||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 1270 TCAATATAGTGATACAGCTAAAGGCTATGCTTCTGCTTCTGATCACCGCAATGTGCAAAC 1329
Query 1317 CGTCCTGCAAAGAATACGGTCCCAGAAAAAGACTAAGGTAAAGCT 1361
||| ||||||||||||||||||||||||||||||||| ||| |||
Sbjct 1330 CGTTCTGCAAAGAATACGGTCCCAGAAAAAGACTAAGCTAACGCT 1374
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67670334660
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5