BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314177
Length=1206
Score E
Sequences producing significant alignments: (Bits) Value
AT2G19360.1 | Symbols: | Protein of Unknown Function (DUF239) ... 364 8e-100
> AT2G19360.1 | Symbols: | Protein of Unknown Function (DUF239)
| chr2:8378664-8383374 FORWARD LENGTH=1281
Length=1281
Score = 364 bits (197), Expect = 8e-100
Identities = 390/481 (81%), Gaps = 21/481 (4%)
Strand=Plus/Plus
Query 17 TTGTGCTCAT-CATTCTAACCATAGCAGC---GAAAGTCACCGAAAGCGAGTTTTCTGAT 72
||||||| || ||||||| ||||| ||| || ||||| | |||||||| |||||||
Sbjct 29 TTGTGCT-ATACATTCTAGTCATAGAAGCTATGATAGTCATAGGAAGCGAGTCTTCTGAT 87
Query 73 AGTCACGATGCTAAAATAACTAGACTTTTGAAGAAACTCAATAAACC-TGCTCTTAAATC 131
|| |||||| |||||| | |||| |||||||||||||| ||||| | | ||||||||
Sbjct 88 TCTCGTGATGCTGAAATAAATCGACTCTTGAAGAAACTCAACAAACCTTTC-CTTAAATC 146
Query 132 TATTAAGAGTCCAGATGGAGATATTATAGATTGTGTTCATATGAAGAATCATCCCATTTA 191
|| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 147 CATCAAGAGTCCAGATGGAGATATCATAGATTGTGTTCATATGAAAAATCATCCCATTTA 206
Query 192 TGATCATCCTTTATTTAAAAATCACACAATCCAGATGAGACCAAGTTCTTATCCGGAAGG 251
||||||||||||||| ||||| ||||| || ||||||||||||| |||||| || |||||
Sbjct 207 TGATCATCCTTTATTCAAAAACCACACCATTCAGATGAGACCAACTTCTTACCCAGAAGG 266
Query 252 AATGAAT-AATGAACCTTCAGACCa--aaaaa-aGGAAAATTTAGTGACTCAACTATGGA 307
| || | ||| || |||||| | ||||| | ||||| || ||||||| ||||
Sbjct 267 A-TGGAGCAATAAAGATTCAGATAACGAAAAACAT-AAAATG--GTTCCTCAACTTTGGA 322
Query 308 CAACCAACGGAAAATGCCCCAAAAATAGTATTCCGATAAGAAGAACAACAAGAGAAGATA 367
||| ||| |||||||| || |||||||||||||| || |||||||| | || ||||||||
Sbjct 323 CAATCAATGGAAAATGTCCAAAAAATAGTATTCCCATCAGAAGAACGAGAAAAGAAGATA 382
Query 368 TTTTACGAGCAAAATCGATCGAAAGCTTTGGaaaaaaa-aCTTCCAACAGGTTTAC-TCA 425
|||||||||||||||| || ||||| ||||| |||||| | | |||||| | | | |||
Sbjct 383 TTTTACGAGCAAAATCAATTGAAAGGTTTGGGAAAAAAGA-TCCCAACAA-TATCCATCA 440
Query 426 ACCTAGTCCAGTGAACTCGA-CTAGTAACGACGGCATACATGAGTACGCAATACTTGAAG 484
|| || ||| ||| || | ||| ||||||||| | ||||||||| || |||||| |||
Sbjct 441 ACATAAACCAACGAA-TCCAACTAATAACGACGGTACACATGAGTATGCCATACTTAAAG 499
Query 485 T 485
|
Sbjct 500 T 500
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59236643100
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5