BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314186
Length=579
Score E
Sequences producing significant alignments: (Bits) Value
AT1G47271.1 | Symbols: | Cystathionine beta-synthase (CBS) fam... 905 0.0
> AT1G47271.1 | Symbols: | Cystathionine beta-synthase (CBS) family
protein | chr1:17328813-17330343 FORWARD LENGTH=625
Length=625
Score = 905 bits (490), Expect = 0.0
Identities = 552/582 (95%), Gaps = 3/582 (1%)
Strand=Plus/Plus
Query 1 ATGAAAGCTTTTGTGAGAGGATTATTAGCAAGAGCTTATGAAGTCCCAAAGA-T--TCAG 57
||||||||||||||||||||| |||||||||||||| |||| |||||||||| | ||||
Sbjct 44 ATGAAAGCTTTTGTGAGAGGACTATTAGCAAGAGCTAATGAGGTCCCAAAGATTCATCAG 103
Query 58 ACGAAAGTATCGGCCAGTTTTGGTTGCGTAACGTCGCCTCCGCCACCGGAGAAAGGATTG 117
| ||| ||||||||| ||||||||||| |||| ||||||||||| ||||||||||| |||
Sbjct 104 AGGAAGGTATCGGCCGGTTTTGGTTGCTTAACTTCGCCTCCGCCGCCGGAGAAAGGGTTG 163
Query 118 GAGAATCTGACGGTGGCGGACGTGCTCTCCACAAAGGACGCTGACGTTGATACGTGGATC 177
|||||||||||||||||||| ||||||||||| ||||| ||||| ||||||||||||||
Sbjct 164 GAGAATCTGACGGTGGCGGATGTGCTCTCCACGAAGGATACTGACATTGATACGTGGATC 223
Query 178 TCTTGCCGTACGAACGACACTGTTTCGGACGCTGTTAAGAATATGGCAAAGCATAATATT 237
|| ||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 224 TCGTGCCGTACGAATGACACTGTTTCTGACGCTGTTAAAAATATGGCAAAGCATAATATT 283
Query 238 GGATCGTTGGTCGTGTTAAAACCTGGAGACCAACAATATATCGCAGGAATTGTCACAGAG 297
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 284 GGATCGTTGGTCGTGTTAGAACCTGGAGACCAACAATATATAGCAGGAATTGTCACAGAG 343
Query 298 AGAGACTATATGAAAAAGATCATTGGGGCAGGAAGATCATCAAAGCTTACAAAAGTTGGA 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 344 AGAGACTATATGAAAAAGATCATTGGGGCAGGAAGATCATCAAAGCTTACAAAAGTTGGA 403
Query 358 GACGTTATGACAGACGAGAGCAAGTTGGTCACTGTTTCATCTGGGACAAACATAATCAAA 417
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 404 GAAGTTATGACAGACGAGAGCAAGTTGGTTACTGTTTCATCTGGGACAAACATAATCAAA 463
Query 418 GCAATGCAGCTTATGTCAGAGAATCACATAAGGCATGTACCGGTGATTGACGGAAAGATA 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 464 GCAATGCAGCTTATGTCAGAGAATCACATAAGGCATGTACCGGTGATTGACGGAAAGATA 523
Query 478 GTAGGACTGATCTCTATGGTTGATGTGGTTAGAGCCATTGTGGACCATCAAAATGGAGAG 537
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 524 GTGGGACTGATCTCTATGGTTGATGTGGTTAAAGCCATTGTGGACCATCAAAATGGAGAG 583
Query 538 CTCAAACGCTTGAATGAATTCATCAAAGGAGACTATTATTAG 579
|||||||| ||||||||||||||||||||||||||||| |||
Sbjct 584 CTCAAACGTTTGAATGAATTCATCAAAGGAGACTATTACTAG 625
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27829717438
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5