BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg314187

Length=243
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G47278.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   422    9e-118


> AT1G47278.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; Has 37 Blast hits 
to 37 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes 
- 1 (source: NCBI BLink). | chr1:17330837-17331899 FORWARD 
LENGTH=564
Length=564

 Score =  422 bits (228),  Expect = 9e-118
 Identities = 238/243 (98%), Gaps = 0/243 (0%)
 Strand=Plus/Plus

Query  1    ATGGGGAGAAAGGCTGGAAATTTGTACATAAACCCGAAAAAGCTCGGGAATCTGGCGAAA  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  149  ATGGGGAGAAAGGCTGGAAATTTGTACATAAACCCGAAAAAGCTCGGGAATTTGGCGAAA  208

Query  61   CCGTGTATGAAGGAAATGGTGTCGTTCTTGAACTGTATGGCGCTTAACAATATCAAAGAT  120
            |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct  209  CCGTGTATGAAGGAAATGGTATCGTTCTTGAACTGTATGGCTCTTAACAATATCAAAGAT  268

Query  121  GATAAATGTGAGAAACAGAAGCAGCTCCTGAGTGTTTGTATGCAGGGCCAGTCGGATCAT  180
            ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct  269  GATAAATGTGAGAAACAGAAGCAACTCCTGAGTGTTTGTATGCAAGGCCAGTCGGATCAT  328

Query  181  AAGAACAAGTCTTGGGGTAACATTAACTACCATTTGCAGAGGCTAACCCGTGGAAGAAAG  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  329  AAGAACAAGTCTTGGGGTAACATTAACTACCATTTGCAGAGGCTAACCCGTGGAAGAAAG  388

Query  241  TAA  243
            |||
Sbjct  389  TAA  391



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11008637031


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5