BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg314188

Length=243
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G47280.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   322    1e-87


> AT1G47280.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant 
structures; EXPRESSED DURING: L mature pollen stage, M germinated 
pollen stage, 4 anthesis, C globular stage, petal differentiation 
and expansion stage; Has 6 Blast hits to 6 proteins 
in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi 
- 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: 
NCBI BLink). | chr1:17332056-17334406 REVERSE LENGTH=524
Length=524

 Score =  322 bits (174),  Expect = 1e-87
 Identities = 220/243 (91%), Gaps = 0/243 (0%)
 Strand=Plus/Plus

Query  1    ATGGAAAAAGTAAAATTCTTTACGATAATCCTTATGGTGACAATGGTTATGACAAGGGTT  60
            ||||| ||||| ||||||||| | || ||| ||| |||| ||||||||||||||| ||||
Sbjct  97   ATGGAGAAAGTCAAATTCTTTGCAATTATCTTTACGGTGTCAATGGTTATGACAATGGTT  156

Query  61   TCGGCGGAAGAGTTACCGGTGAAAGTGACGGCCAATGAGGTGACCCTTGCCGCGGAGGCT  120
            ||||||||||||||||||||||||||||||| ||||||| |||| ||||| |||||||||
Sbjct  157  TCGGCGGAAGAGTTACCGGTGAAAGTGACGGGCAATGAGATGACTCTTGCGGCGGAGGCT  216

Query  121  GCCGCTTCGAGTTTTAAAAGCAGCGCCGGAGAGGCTGCTCAAGGGGCAAAGTCATGGGCT  180
            |||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||
Sbjct  217  GCCGCTTCGAGTTTCAAAAGCAGCGCCGGAGAGGCTGCTCAAGGAGCCAAGTCATGGGCT  276

Query  181  GATTGGGCTACTAGCAAAATCAGGCATCCTGGCGGTTTAGTGAAAACACCCGGTTCAGAG  240
            |||||||||||||||||||||||||||| |||| | || | |||||||||||| ||||| 
Sbjct  277  GATTGGGCTACTAGCAAAATCAGGCATCTTGGCAGCTTGGAGAAAACACCCGGATCAGAT  336

Query  241  TGA  243
            |||
Sbjct  337  TGA  339



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11008637031


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5