BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314194
Length=1023
Score E
Sequences producing significant alignments: (Bits) Value
AT3G61350.1 | Symbols: SKIP4 | SKP1 interacting partner 4 | chr... 1177 0.0
AT3G61360.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 132 8e-30
> AT3G61350.1 | Symbols: SKIP4 | SKP1 interacting partner 4 | chr3:22702684-22704481
FORWARD LENGTH=1280
Length=1280
Score = 1177 bits (637), Expect = 0.0
Identities = 724/764 (95%), Gaps = 13/764 (2%)
Strand=Plus/Plus
Query 270 ATCCATGAATATCCCAATGAGAGAAGGCATGGGTTTTGCAGCATTGGGTAAGAGACTTTT 329
|||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 413 ATCCAT--ATATCCCAATGAGAGAAGGCATGGGTTTTGCAGTATTGGGTAAGAGACTGTT 470
Query 330 TGTGTTGGGTGGATGTGGTTGGTTAGAAGATGCTACTGATGAGGTTTATTGCTATGATGC 389
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 471 TGTGTTGGGTGGATGTGGTTGGTTAGAAGATGCTACTGATGAGATTTATTGCTATGATGC 530
Query 390 TGCTATAAACACTTGGTTTGACGTAGTAACTCCTCTTTCAACTAAAAGATGCTACTTTGC 449
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 531 TGCTATGAACACTTGGTTTGACGTAGTACCTCCTCTTTCAACTAAAAGATGCTACTTTGC 590
Query 450 TTGTGAAACGTTGGATGGAAAAATTATGGCAATTGGTGGGCTAGGATTGAATCCAAACGC 509
|||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 591 TTGTGAAACGCTGGATGGAAAAATTATTGCAATTGGTGGGTTAGGATTGAATCCAAACGC 650
Query 510 TAAACGAAGTTGGGACATCTATGATCCTTTGACCAGAACCTGCAAATCTTGTTC-----T 564
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 651 TAAACGAACTTGGGACATCTATGATCCTTTGACCAGAACCTGCAAATCTTGTTCTGATGT 710
Query 565 G---A-TGTCCCTGAAATAGAAGATTCATTTGTAATGGACGGAAGGATTTATATTCGGGG 620
| | |||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 711 GAATATTGTCCCTGAAATGGAAGATTCATTTGTAATGGATGGAAGGATTTATATTCGGGG 770
Query 621 TGGTGTTGGTGGATCTTCCAGTGCAGTCTATAGTGCATCTAGCGGGATTTGGGAACGTAT 680
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 771 TGGTGTTGGAGGATCTTCCACTGCAGTCTATAGTGCATCTAGCGGGATTTGGGAACGTAT 830
Query 681 GGATGATGATATGGCATCAGGATGGCGAGGTCCAGCAGTTGTTGTGGCAGATGAGCTCTA 740
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 831 GGATGATGATATGGCATCAGGATGGCGAGGTCCAGCAGTTGTTGTGGCAGGTGATCTCTA 890
Query 741 TGTTTTGGATCAAACTTTTGGAGCTACGCTAACAATGTGGTGCAAGGAAACAAGAATGTG 800
|||||||||||| ||||||||||||| ||||||||||||||||||||| || ||||||||
Sbjct 891 TGTTTTGGATCAGACTTTTGGAGCTAAGCTAACAATGTGGTGCAAGGATACGAGAATGTG 950
Query 801 GATTCGTATCGGGAAGCTATCTCAATTGGTGATGAAGCAGCTTTGTCGGCTTGTTTCTAT 860
||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 951 GATTCATATCGGGAAGCTATCTCAATTGGTGATGAAGCAGCCTTGTCGGCTTGTATCTAT 1010
Query 861 TGGAAATAGTATCTTTGTGATTGGTAAGGATTGCTCTACTGTGGTGATTGATGTTGAGAA 920
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1011 TGGGAATAGTATCTTTGTGATTGGTAAGGATTGCTCTACTGTGGTAATTGATGTTGAGAA 1070
Query 921 TGTGAGGAAGACGACA-ATGAACGGAGTAATGGTGTGTTCTTCTATACCAAAGACTTGGG 979
||||||||||| | | ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1071 TGTGAGGAAGAATA-AGATGAATGGAGTAATGGTGTGTTCTTCTATACCAAAGACTTGGG 1129
Query 980 ATGATGATATAGATGTTATTAGCTGTAAATCTGTAGCCATATAA 1023
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1130 ATGATGATATAGATGTTATTAGCTGTAAATCTGTAGCCATATAA 1173
Score = 379 bits (205), Expect = 3e-104
Identities = 237/253 (94%), Gaps = 0/253 (0%)
Strand=Plus/Plus
Query 1 ATGGCGTGTATAGTAGAGGAGACAGAACGTGCAGATGAATCAAACGAGACACAAATTGCG 60
|||||||||||||||||||| || ||||||||| | ||||||| ||||||||||||||
Sbjct 97 ATGGCGTGTATAGTAGAGGATCCACAACGTGCAGGTCAATCAAATGAGACACAAATTGCA 156
Query 61 CTTATAAGCGGAGTTCCTGATGATATCTCAAAATCCTGCTTGGCTAGAGTTCCAAGAGAA 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 157 CTTATAAGCGGAGTTCCTGATGATATCTCAAAATCCTGCTTAGCTAGAGTTCCAAGAGAA 216
Query 121 TATCACATGGCAATGAAATGTGTTTCAAGGAGATGGAGAGATTTCGTGTGCGGTGATGAA 180
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 217 TATCACATGGCAATGAAATGTGTTTCAAGGAGATGGAGAGATTTTGTGTGCAGTGATGAA 276
Query 181 TTTTGCGATTATCGAAACAAGTTTAACTTGGCTGAATCTTGGATTTATGCGTTGTGCCGC 240
| ||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 277 ATGTGCGACTATCGAAACGAGTTTAACTTGGCTGAATCTTGGATTTACGCGTTGTGCCGC 336
Query 241 GATATATCTGGCG 253
|| ||||||||||
Sbjct 337 GACATATCTGGCG 349
> AT3G61360.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:22704304-22706138 REVERSE LENGTH=1835
Length=1835
Score = 132 bits (71), Expect = 8e-30
Identities = 71/71 (100%), Gaps = 0/71 (0%)
Strand=Plus/Minus
Query 953 TGTGTTCTTCTATACCAAAGACTTGGGATGATGATATAGATGTTATTAGCTGTAAATCTG 1012
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1835 TGTGTTCTTCTATACCAAAGACTTGGGATGATGATATAGATGTTATTAGCTGTAAATCTG 1776
Query 1013 TAGCCATATAA 1023
|||||||||||
Sbjct 1775 TAGCCATATAA 1765
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50133678706
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5