BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg314206 Length=957 Score E Sequences producing significant alignments: (Bits) Value AT3G24580.1 | Symbols: | F-box and associated interaction doma... 213 3e-54 AT3G23420.1 | Symbols: | F-box and associated interaction doma... 156 4e-37 AT3G25225.1 | Symbols: | pseudogene, hypothetical protein | ch... 95.3 1e-18 AT3G22940.1 | Symbols: | F-box associated ubiquitination effec... 65.8 8e-10 > AT3G24580.1 | Symbols: | F-box and associated interaction domains-containing protein | chr3:8969162-8970298 FORWARD LENGTH=1137 Length=1137 Score = 213 bits (115), Expect = 3e-54 Identities = 166/190 (87%), Gaps = 5/190 (3%) Strand=Plus/Plus Query 44 ACCTTGATGATCAAGCAAAAGTAGAAGC-AAAGAAAAGAGAATTTCTGGTGGTCATGATG 102 |||||| | ||||||||| ||||| ||| || ||||| ||| ||| || ||||| ||||| Sbjct 140 ACCTTGGTTATCAAGCAATAGTAGCAGCGAAGGAAAA-AGAGTTTATGATGGTCCTGATG 198 Query 103 ATGGATTTTAGGGTTTATTTGATGCGCGTCAATC-TTCACAATGACGTTGAGTCATGTAT 161 ||||||||||||||||||||||| || ||||| | ||||||||||| ||||||| ||||| Sbjct 199 ATGGATTTTAGGGTTTATTTGATTCGAGTCAA-CGTTCACAATGACATTGAGTCGTGTAT 257 Query 162 AAAGCGTGAAGGTGAACTTTTTAGTTTAGGCGATGAAGTCGATGTATCTCTAAGTCTTTC 221 |||| ||||||||| ||| |||| || |||||||||||||||||||||| ||||||||| Sbjct 258 TAAGCCTGAAGGTGAGCTTATTAGCTTGGGCGATGAAGTCGATGTATCTC-AAGTCTTTC 316 Query 222 ACTGCGACGG 231 |||||||||| Sbjct 317 ACTGCGACGG 326 > AT3G23420.1 | Symbols: | F-box and associated interaction domains-containing protein | chr3:8386273-8387324 REVERSE LENGTH=858 Length=858 Score = 156 bits (84), Expect = 4e-37 Identities = 128/149 (86%), Gaps = 3/149 (2%) Strand=Plus/Plus Query 37 AAGGAGTACCTTG-ATGATCAAGCAAAAGTAGAAGCAAAGAAAAGAGAATTTCTGGTGGT 95 ||| || |||||| || |||||||||||||| |||||||||||||| | | |||||| Sbjct 103 AAGAAGCACCTTGTTTG-TCAAGCAAAAGTAGCTGCAAAGAAAAGAGAGTATAAGGTGGT 161 Query 96 CATGATGATGGATTTTAGGGTTTATTTGATGCGCGTCAATCTTCACAATGACGTTGAGTC 155 |||||||||||||||||||||||||||||||||| | |||||||| || ||||||| | Sbjct 162 CATGATGATGGATTTTAGGGTTTATTTGATGCGCATAAATCTTCAGAACAACGTTGAATT 221 Query 156 ATGTATAAAGCGTGAAGGTGAACTT-TTT 183 ||||||||||||||| |||||||| ||| Sbjct 222 GTGTATAAAGCGTGAACGTGAACTTCTTT 250 > AT3G25225.1 | Symbols: | pseudogene, hypothetical protein | chr3:9184970-9186171 FORWARD LENGTH=1202 Length=1202 Score = 95.3 bits (51), Expect = 1e-18 Identities = 151/195 (77%), Gaps = 23/195 (12%) Strand=Plus/Plus Query 390 TGAGTTTAAAATCTACGATATTAACTCTGATTCATGGAGGGTTCTTGATATCAGTCCATA 449 |||||| | |||||||||| ||||||||||||||||||||||||||||| ||| |||| | Sbjct 581 TGAGTTCATAATCTACGATTTTAACTCTGATTCATGGAGGGTTCTTGATGTCACTCCAGA 640 Query 450 CTGT-CAGATACACTCTGATA-GT-CGT-GGCGTCTCTGTCAAGAGAAATACGTACTGGT 505 || | |||| | | | ||| | | | ||||| ||| ||||| ||||| | ||||||| Sbjct 641 TTGGAC-GATA-AGT-T-ATATGAACCTTGGCGTGTCTCTCAAGGGAAATGCATACTGGT 696 Query 506 TTG-T--T-AGA-A-A--CAGG--C-GACG-TT-T--CTTAGTCTGTTTTAATTTCACAA 550 ||| | | ||| | | | | | |||| || | ||||||||||||| ||||||||| Sbjct 697 TTGCTACTGAGAGATATTCCGAAACAGACGATTATTTCTTAGTCTGTTTTGATTTCACAA 756 Query 551 GAGAGAGTTTTGGGC 565 |||||| ||||||| Sbjct 757 GAGAGACATTTGGGC 771 > AT3G22940.1 | Symbols: | F-box associated ubiquitination effector family protein | chr3:8131468-8132706 FORWARD LENGTH=1239 Length=1239 Score = 65.8 bits (35), Expect = 8e-10 Identities = 35/35 (100%), Gaps = 0/35 (0%) Strand=Plus/Plus Query 916 CCACTTGTGTGCTCTTATGTTCCGAGTTTAGTGCA 950 ||||||||||||||||||||||||||||||||||| Sbjct 1060 CCACTTGTGTGCTCTTATGTTCCGAGTTTAGTGCA 1094 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46818225004 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5