BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314206
Length=957
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24580.1 | Symbols: | F-box and associated interaction doma... 213 3e-54
AT3G23420.1 | Symbols: | F-box and associated interaction doma... 156 4e-37
AT3G25225.1 | Symbols: | pseudogene, hypothetical protein | ch... 95.3 1e-18
AT3G22940.1 | Symbols: | F-box associated ubiquitination effec... 65.8 8e-10
> AT3G24580.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:8969162-8970298 FORWARD LENGTH=1137
Length=1137
Score = 213 bits (115), Expect = 3e-54
Identities = 166/190 (87%), Gaps = 5/190 (3%)
Strand=Plus/Plus
Query 44 ACCTTGATGATCAAGCAAAAGTAGAAGC-AAAGAAAAGAGAATTTCTGGTGGTCATGATG 102
|||||| | ||||||||| ||||| ||| || ||||| ||| ||| || ||||| |||||
Sbjct 140 ACCTTGGTTATCAAGCAATAGTAGCAGCGAAGGAAAA-AGAGTTTATGATGGTCCTGATG 198
Query 103 ATGGATTTTAGGGTTTATTTGATGCGCGTCAATC-TTCACAATGACGTTGAGTCATGTAT 161
||||||||||||||||||||||| || ||||| | ||||||||||| ||||||| |||||
Sbjct 199 ATGGATTTTAGGGTTTATTTGATTCGAGTCAA-CGTTCACAATGACATTGAGTCGTGTAT 257
Query 162 AAAGCGTGAAGGTGAACTTTTTAGTTTAGGCGATGAAGTCGATGTATCTCTAAGTCTTTC 221
|||| ||||||||| ||| |||| || |||||||||||||||||||||| |||||||||
Sbjct 258 TAAGCCTGAAGGTGAGCTTATTAGCTTGGGCGATGAAGTCGATGTATCTC-AAGTCTTTC 316
Query 222 ACTGCGACGG 231
||||||||||
Sbjct 317 ACTGCGACGG 326
> AT3G23420.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:8386273-8387324 REVERSE LENGTH=858
Length=858
Score = 156 bits (84), Expect = 4e-37
Identities = 128/149 (86%), Gaps = 3/149 (2%)
Strand=Plus/Plus
Query 37 AAGGAGTACCTTG-ATGATCAAGCAAAAGTAGAAGCAAAGAAAAGAGAATTTCTGGTGGT 95
||| || |||||| || |||||||||||||| |||||||||||||| | | ||||||
Sbjct 103 AAGAAGCACCTTGTTTG-TCAAGCAAAAGTAGCTGCAAAGAAAAGAGAGTATAAGGTGGT 161
Query 96 CATGATGATGGATTTTAGGGTTTATTTGATGCGCGTCAATCTTCACAATGACGTTGAGTC 155
|||||||||||||||||||||||||||||||||| | |||||||| || ||||||| |
Sbjct 162 CATGATGATGGATTTTAGGGTTTATTTGATGCGCATAAATCTTCAGAACAACGTTGAATT 221
Query 156 ATGTATAAAGCGTGAAGGTGAACTT-TTT 183
||||||||||||||| |||||||| |||
Sbjct 222 GTGTATAAAGCGTGAACGTGAACTTCTTT 250
> AT3G25225.1 | Symbols: | pseudogene, hypothetical protein |
chr3:9184970-9186171 FORWARD LENGTH=1202
Length=1202
Score = 95.3 bits (51), Expect = 1e-18
Identities = 151/195 (77%), Gaps = 23/195 (12%)
Strand=Plus/Plus
Query 390 TGAGTTTAAAATCTACGATATTAACTCTGATTCATGGAGGGTTCTTGATATCAGTCCATA 449
|||||| | |||||||||| ||||||||||||||||||||||||||||| ||| |||| |
Sbjct 581 TGAGTTCATAATCTACGATTTTAACTCTGATTCATGGAGGGTTCTTGATGTCACTCCAGA 640
Query 450 CTGT-CAGATACACTCTGATA-GT-CGT-GGCGTCTCTGTCAAGAGAAATACGTACTGGT 505
|| | |||| | | | ||| | | | ||||| ||| ||||| ||||| | |||||||
Sbjct 641 TTGGAC-GATA-AGT-T-ATATGAACCTTGGCGTGTCTCTCAAGGGAAATGCATACTGGT 696
Query 506 TTG-T--T-AGA-A-A--CAGG--C-GACG-TT-T--CTTAGTCTGTTTTAATTTCACAA 550
||| | | ||| | | | | | |||| || | ||||||||||||| |||||||||
Sbjct 697 TTGCTACTGAGAGATATTCCGAAACAGACGATTATTTCTTAGTCTGTTTTGATTTCACAA 756
Query 551 GAGAGAGTTTTGGGC 565
|||||| |||||||
Sbjct 757 GAGAGACATTTGGGC 771
> AT3G22940.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:8131468-8132706 FORWARD LENGTH=1239
Length=1239
Score = 65.8 bits (35), Expect = 8e-10
Identities = 35/35 (100%), Gaps = 0/35 (0%)
Strand=Plus/Plus
Query 916 CCACTTGTGTGCTCTTATGTTCCGAGTTTAGTGCA 950
|||||||||||||||||||||||||||||||||||
Sbjct 1060 CCACTTGTGTGCTCTTATGTTCCGAGTTTAGTGCA 1094
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46818225004
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5