BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg314222 Length=552 Score E Sequences producing significant alignments: (Bits) Value AT1G47760.1 | Symbols: AGL102 | AGAMOUS-like 102 | chr1:1757245... 671 0.0 > AT1G47760.1 | Symbols: AGL102 | AGAMOUS-like 102 | chr1:17572451-17573159 FORWARD LENGTH=555 Length=555 Score = 671 bits (363), Expect = 0.0 Identities = 472/525 (90%), Gaps = 6/525 (1%) Strand=Plus/Plus Query 1 ATGGGTCGTAGCAAAATAGAGATAAAACGTATTGAAGATATCACCAAAAGGAAAGCGACG 60 ||||||||||| ||||||||||||||| ||||||||||| || | |||||||||||||| Sbjct 1 ATGGGTCGTAGAAAAATAGAGATAAAATTTATTGAAGATAGCATCGAAAGGAAAGCGACG 60 Query 61 TTTTTAAGACGCCGAAAAAGTATTTTTAAGAAGGCCGATGCACTCGCAAAGCTGTGTAAT 120 |||| |||||||||||| | |||||||||||||| |||| |||||| ||| |||||||| Sbjct 61 TTTTCAAGACGCCGAAATGGCATTTTTAAGAAGGCTGATGAACTCGCGAAGTTGTGTAAT 120 Query 121 GTGGAAG-TTGCTGTCTTGGTCATCTCCCCCACAAATATACCGTACACATACGGTAATCC 179 || | || ||||||||||||||||||||||||| |||||||| |||||||||||| |||| Sbjct 121 GTAG-AGATTGCTGTCTTGGTCATCTCCCCCACTAATATACCATACACATACGGTTATCC 179 Query 180 ATGCTTCAACGATGTGGTTGAGCGTATCCAAAATCCTAGTGCTTCGTCCAAACTCGA-TA 238 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | | Sbjct 180 ATGCTTCAACGATGTGGTTGAGCGTATTCAAAATCCTAGTGCTTCGTCCAAACTC-AGGA 238 Query 239 GTCTCATGAAAGAATTGGAACAAATCAAAGAGCTTGAGGAGGTTTTAAGGAAGAGGCAAC 298 |||||||||||||||||||||||||||||||| || |||||| ||| ||||||| || | Sbjct 239 GTCTCATGAAAGAATTGGAACAAATCAAAGAGTTTCAGGAGGATTTGAGGAAGAAACAGC 298 Query 299 aaaaaaaCCGTGAAAAGTCCAATATGAAGGGGATTGTTGATTTGAAATTGGAGGACTTAG 358 ||| ||||| |||||||||||||||||| | || ||| ||| |||||||||||||||||| Sbjct 299 AAAGAAACCTTGAAAAGTCCAATATGAAAGAGAATGTAGATCTGAAATTGGAGGACTTAG 358 Query 359 TTGCTTTCAAGGGGAAACTCGAGG-CTCATCAAGCAGGTTTAAAGAGGAAACATGTAGAG 417 |||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 359 TTGCTTTCAAGGCGAAACTCGAGGCCT-ATCAAGCAGGTTTAAAGAGGAAACATGTAGAG 417 Query 418 ATGGAGGATTTGTCTTCTCCATCGATGCTCTCAAAGAATACGAAGAAGAAGAAGACAAGG 477 |||||||||||||||||||||||||| |||||||||||||| ||||| |||| || ||| Sbjct 418 ATGGAGGATTTGTCTTCTCCATCGATACTCTCAAAGAATACAAAGAATAAGATGATGAGG 477 Query 478 ACCGAGTCTTCTTCTGGACAGAGCAGAGAAATGTATGAACTTCGG 522 ||||||| ||| ||||||||||||| || ||||||||| ||||| Sbjct 478 ACCGAGTATTCGTCTGGACAGAGCAAAGGAATGTATGAGTTTCGG 522 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26473395469 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5