BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg314222

Length=552
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G47760.1 | Symbols: AGL102 | AGAMOUS-like 102 | chr1:1757245...   671    0.0  


> AT1G47760.1 | Symbols: AGL102 | AGAMOUS-like 102 | chr1:17572451-17573159 
FORWARD LENGTH=555
Length=555

 Score =  671 bits (363),  Expect = 0.0
 Identities = 472/525 (90%), Gaps = 6/525 (1%)
 Strand=Plus/Plus

Query  1    ATGGGTCGTAGCAAAATAGAGATAAAACGTATTGAAGATATCACCAAAAGGAAAGCGACG  60
            ||||||||||| |||||||||||||||  ||||||||||| || | ||||||||||||||
Sbjct  1    ATGGGTCGTAGAAAAATAGAGATAAAATTTATTGAAGATAGCATCGAAAGGAAAGCGACG  60

Query  61   TTTTTAAGACGCCGAAAAAGTATTTTTAAGAAGGCCGATGCACTCGCAAAGCTGTGTAAT  120
            |||| ||||||||||||  | |||||||||||||| |||| |||||| ||| ||||||||
Sbjct  61   TTTTCAAGACGCCGAAATGGCATTTTTAAGAAGGCTGATGAACTCGCGAAGTTGTGTAAT  120

Query  121  GTGGAAG-TTGCTGTCTTGGTCATCTCCCCCACAAATATACCGTACACATACGGTAATCC  179
            || | || ||||||||||||||||||||||||| |||||||| |||||||||||| ||||
Sbjct  121  GTAG-AGATTGCTGTCTTGGTCATCTCCCCCACTAATATACCATACACATACGGTTATCC  179

Query  180  ATGCTTCAACGATGTGGTTGAGCGTATCCAAAATCCTAGTGCTTCGTCCAAACTCGA-TA  238
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |  |
Sbjct  180  ATGCTTCAACGATGTGGTTGAGCGTATTCAAAATCCTAGTGCTTCGTCCAAACTC-AGGA  238

Query  239  GTCTCATGAAAGAATTGGAACAAATCAAAGAGCTTGAGGAGGTTTTAAGGAAGAGGCAAC  298
            |||||||||||||||||||||||||||||||| || |||||| ||| |||||||  || |
Sbjct  239  GTCTCATGAAAGAATTGGAACAAATCAAAGAGTTTCAGGAGGATTTGAGGAAGAAACAGC  298

Query  299  aaaaaaaCCGTGAAAAGTCCAATATGAAGGGGATTGTTGATTTGAAATTGGAGGACTTAG  358
            ||| ||||| |||||||||||||||||| | || ||| ||| ||||||||||||||||||
Sbjct  299  AAAGAAACCTTGAAAAGTCCAATATGAAAGAGAATGTAGATCTGAAATTGGAGGACTTAG  358

Query  359  TTGCTTTCAAGGGGAAACTCGAGG-CTCATCAAGCAGGTTTAAAGAGGAAACATGTAGAG  417
            |||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct  359  TTGCTTTCAAGGCGAAACTCGAGGCCT-ATCAAGCAGGTTTAAAGAGGAAACATGTAGAG  417

Query  418  ATGGAGGATTTGTCTTCTCCATCGATGCTCTCAAAGAATACGAAGAAGAAGAAGACAAGG  477
            |||||||||||||||||||||||||| |||||||||||||| ||||| |||| ||  |||
Sbjct  418  ATGGAGGATTTGTCTTCTCCATCGATACTCTCAAAGAATACAAAGAATAAGATGATGAGG  477

Query  478  ACCGAGTCTTCTTCTGGACAGAGCAGAGAAATGTATGAACTTCGG  522
            ||||||| ||| ||||||||||||| || |||||||||  |||||
Sbjct  478  ACCGAGTATTCGTCTGGACAGAGCAAAGGAATGTATGAGTTTCGG  522



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26473395469


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5