BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314223
Length=1092
Score E
Sequences producing significant alignments: (Bits) Value
AT1G47765.1 | Symbols: | F-box and associated interaction doma... 460 9e-129
AT3G10240.1 | Symbols: | F-box and associated interaction doma... 420 2e-116
> AT1G47765.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:17574906-17576092 REVERSE LENGTH=1158
Length=1158
Score = 460 bits (249), Expect = 9e-129
Identities = 628/796 (79%), Gaps = 85/796 (11%)
Strand=Plus/Plus
Query 11 aaaa-ag-agaagagaaaa-t--tctccaaaagaaaaagaaCACAATCTCCAAAACCAAC 65
|||| || ||||||||||| | |||| ||||| |||||||||||| | ||||| || |
Sbjct 12 AAAACAGAAGAAGAGAAAAGTAGTCTCGAAAAGTAAAAGAACACAA--T-CAAAATCAGC 68
Query 66 TTCGTCCTTTCCTCTAGATCTAATCTCAGAGATACTCTTAAGGCTACCTGAGAAATCTGT 125
||||||| ||||||| ||||||| ||| |||||||||||||||||||||||||||||| |
Sbjct 69 TTCGTCCCTTCCTCTGGATCTAACCTCGGAGATACTCTTAAGGCTACCTGAGAAATCTAT 128
Query 126 TGCGAGGTTTCGTTGCGTGTCGAAGCTTTGGTTATCAATCA-CA---A--C-----T-AG 173
||||||||||||||| ||||||||||||||||||||||||| || | | | |
Sbjct 129 TGCGAGGTTTCGTTGTGTGTCGAAGCTTTGGTTATCAATCACCACCGATCCATATTTCAT 188
Query 174 GAA--TG-T----AGTC-GT-GGGGCTGCCGAGTCTTTT-GCTTTGCTTCACT-GAATAT 222
|| || | | || || | |||||||||||| | ||||||||| | ||| ||
Sbjct 189 CAACTTGTTCGAAACTCGGTCCCCACGGCCGAGTCTTTTAG-TTTGCTTCA-TAGAAAAT 246
Query 223 GAAAAGTTGTTTGTTTCCTCGATTCCGCAACATCATCATTCACTTCAGGATTCGAACAA- 281
|| ||||||||||| ||||| ||||||||||||| ||||||||||||| |||| || ||
Sbjct 247 GACAAGTTGTTTGTGTCCTCAATTCCGCAACATCTTCATTCACTTCAGAATTCTAA-AAG 305
Query 282 ATCTTACTCTTCTTCTCAGCCTATTGATCGTTATCATTTGAAATTCCTATTACATAATAA 341
|||||||||||||||||| | || ||||| || | | | | | || ||
Sbjct 306 GTCTTACTCTTCTTCTCAG-C------TCTTTATC-GTT---A-T-C-A-T--AT-GGAA 347
Query 342 CTTCCCCCTTACGGAATCTGTCCATGGCTTGATCTGCTTTCAAGA-ATCAGCAACGCCAA 400
|| || | || | ||| | ||||||||||||||| |||| |||| || ||| |
Sbjct 348 -TT--ACCAGAAGG-A--TGT--A-GGCTTGATCTGCTTT-AAGACATCAAAAATGCCGA 397
Query 401 TAGTTTGTAACCCTAGCAAGAGGCAG-TGCTTAACTTTACCTAAACCTAGA-AAGAGCTG 458
||||||| |||||||||||||| ||| || |||||||||| | ||| ||| | |||||
Sbjct 398 TAGTTTGGAACCCTAGCAAGAGACAGTTG-ATAACTTTACCCATACCCAGATTA-AGCTG 455
Query 459 GGAGCGGCTAACAG-TTTTCTTAGGATATGATCCCA-TCGAAGGTAAACACAAAGTAATG 516
| | ||| || ||||| ||||||| ||| ||| | |||||||||||||||||||||
Sbjct 456 GAATAATATAATAGTTTTTC-TAGGATACGAT-CCAGTTGAAGGTAAACACAAAGTAATG 513
Query 517 TGCTTGCCTTTTAGAAGAAGTTCTGATGTGTGTCGGGTTTTAACATTGGGACCAGCTCAA 576
||||||||||||||||||||||||||||| |||| || |||||||| ||||||||||||
Sbjct 514 TGCTTGCCTTTTAGAAGAAGTTCTGATGTATGTCAAGTGTTAACATTAGGACCAGCTCAA 573
Query 577 GAAT-C--ATGGAGAACTGTCAAAAC-TAAACC-TACGCATTGTTCTGACTACCATACTT 631
|||| | ||||| ||| || ||||| || || || ||||||||||||||| || | ||
Sbjct 574 GAATTCTCATGGATAACGGTAAAAACGTA--CCATAAGCATTGTTCTGACTATCAGAGTT 631
Query 632 CGGGTCGGTGCATCAAGGGGGTTGTATATTATATAGCCTCT-GTTTATCGTACAGATGTT 690
| ||||| ||||||||||||||||||||||||||||| || ||||||| |||| ||| |
Sbjct 632 CTGGTCGATGCATCAAGGGGGTTGTATATTATATAGC-TCAAGTTTATCATACACATGCT 690
Query 691 TGGGTTGTAATGAGCTTTGATGTCAGATCTGAAAAGTTTGGTATGATTCAGTTACCAT-C 749
|||||| ||||| | |||||||||||||||||||| || | ||||| | |||| || |
Sbjct 691 TGGGTTTTAATGTGTTTTGATGTCAGATCTGAAAAATTCGACATGATAAAATTAC-ATGC 749
Query 750 TGAT-TTTCATAGGGA 764
||| ||| |||||||
Sbjct 750 GGATATTT-ATAGGGA 764
> AT3G10240.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:3166698-3167867 FORWARD LENGTH=1170
Length=1170
Score = 420 bits (227), Expect = 2e-116
Identities = 566/721 (79%), Gaps = 58/721 (8%)
Strand=Plus/Plus
Query 67 TCGTCCTTTCCTCTAGATCTAATCTCAGAGATACTCTTAAGGCTACCTGAGAAATCTGTT 126
|||||| |||||||||||||| |||||||||||||| |||| || |||||||||||||||
Sbjct 73 TCGTCCATTCCTCTAGATCTAGTCTCAGAGATACTCCTAAGACTGCCTGAGAAATCTGTT 132
Query 127 GCGAGGTTTCGTTGCGTGTCGAAGCTTTGGTTATCAATCA-CAACTAG-GA-A--T-GT- 179
|||||||||||||||||||| |||| ||||| |||||||| || | || | | | |
Sbjct 133 GCGAGGTTTCGTTGCGTGTCCAAGCCTTGGTCATCAATCACCACCGAGCCATATTTCATC 192
Query 180 -A---G-T--C--GTGGGGCTGCCGA-GTCTTTTGCTTTGCTTCACTG-AATATGAAAAG 228
| | | | | || || || | | ||||| || ||||||| | || ||||||||
Sbjct 193 AACTTGTTAACAACTAGGTCT-CC-ACGGCTTTTACTCTGCTTCAAAGCAA-ATGAAAAG 249
Query 229 TTGTTTGTTTCCTCGATTCCGCAACATCATCATTCACTTCAGGA-TTCGAACAAATCTTA 287
|| ||||||||||||||||||||||||| ||| | || | || || |||||| ||| |
Sbjct 250 TTTTTTGTTTCCTCGATTCCGCAACATCGTCAGACGTTTGA-GACTTGGAACAAGTCTCA 308
Query 288 CTCTTCTTCTCAGCCTATTGATCGTTATCATTTGAAATTC-C-TATTACAT-AATAACTT 344
||||| |||||||| |||||||||||||||| || ||||| | | | || ||| ||||
Sbjct 309 CTCTTATTCTCAGCTTATTGATCGTTATCATATGGAATTCTCAGAAGAAATGAATTACTT 368
Query 345 CCCCCTTACGGAATCTGTCCATGGCTTGATCTGCTTTCAAGAATCAGCAACGCCAATAGT 404
||||| ||||||||||||| |||||||||||||||||||||||||||| | || || ||
Sbjct 369 CCCCCCTACGGAATCTGTCAATGGCTTGATCTGCTTTCAAGAATCAGCTAGGCTGATTGT 428
Query 405 TTGTAACCCTAGCAAGAGGCAGT-GCTTAACTTTACCTAAACCTAGAAAG-AGCTGGGA- 461
||| |||||||| | | | |||| | |||| |||||| ||||| | | | | || | |
Sbjct 429 TTGGAACCCTAGTACGCGACAGTTG-TTAATTTTACCAAAACCCA-ATGGGAACTCGAAT 486
Query 462 GCGGCTAACAGT-TTTCTTAGGATATGATCCCA-TCGAAGGTAAACACAAAGTAATGTGC 519
| |||||| | ||| |||||||| ||||| | | ||||||||||||||||||||||||
Sbjct 487 GAT-CTAACAATCTTT-TTAGGATACGATCC-AGTGGAAGGTAAACACAAAGTAATGTGC 543
Query 520 TTGCC-TTTT-AGAAGAAGTTCTGATGTGTGTCGGGTTTTAACATTGGGACCAGCTCAAG 577
|| |||| || | | || |||| |||||| || ||||| || ||| ||||||||
Sbjct 544 ATGGAGTTTTCAGCA-AC-TTATGATACGTGTCGAGTATTAACCTTAGGATCAGCTCAAA 601
Query 578 AATCATGGAGAACTGTCAAAACT-A-AACCTACGCATTGTTCTGACTACCAT-ACTTC-G 633
||| ||||||||| ||||||||| | || || |||| |||||||||| || | ||| |
Sbjct 602 AATTATGGAGAACGGTCAAAACTCATAA--TAAGCATCGTTCTGACTATTATGA-TTCTG 658
Query 634 GGTCGGTGCATCAAGGGGGTTGTATATTATATAGCCTCTGTTTATCG-TACAGATGT-T- 690
|| | |||||||| || ||||||||| ||||||||| ||| | | || | ||| |
Sbjct 659 GGA-GATGCATCAACGGTGTTGTATATCATATAGCCTATGTCAAG-GATAT-G-TGTGTG 714
Query 691 TGGGTTGTAATGAGCTTTGATGTCAGATCTGAAA-AGTTTGGTATGATTC-AGTTACCAT 748
|||||| ||||||||||||||||||||||||||| | || | |||||| | |||||||||
Sbjct 715 TGGGTTCTAATGAGCTTTGATGTCAGATCTGAAATA-TTCGATATGAT-CGAGTTACCAT 772
Query 749 C 749
|
Sbjct 773 C 773
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53513780970
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5