BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314227
Length=1476
Score E
Sequences producing significant alignments: (Bits) Value
AT1G47840.1 | Symbols: HXK3 | hexokinase 3 | chr1:17616107-1761... 2200 0.0
AT1G47860.1 | Symbols: | transposable element gene | chr1:1762... 311 1e-83
> AT1G47840.1 | Symbols: HXK3 | hexokinase 3 | chr1:17616107-17618894
REVERSE LENGTH=1653
Length=1653
Score = 2200 bits (1191), Expect = 0.0
Identities = 1392/1488 (94%), Gaps = 18/1488 (1%)
Strand=Plus/Plus
Query 1 ATGTCACTCATGTTTTCTTCCCCTGTCGTCACCCCAACCA-TCGGATCTTTCACCTTCTC 59
||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||
Sbjct 36 ATGTCACTCATGTTTTCTTCCCCTGTCGTCACCCC-AGCACTCGGATCTTTCACCTTCTC 94
Query 60 ATCTCG---ACGCTCAAACTACATCGTGATGTCCGCCGTCCGATCTAACTCGGCTTCGAC 116
|||||| |||||| || |||||||||||||||||||||||||||||||| ||||||||
Sbjct 95 ATCTCGACCACGCTCCAATTACATCGTGATGTCCGCCGTCCGATCTAACTCTGCTTCGAC 154
Query 117 GTGTCCTGTACTAACCAAGTTTCAGAAGGACTGTGCCACTCCTACACCGTATCTACGCAA 176
||||||| |||| |||||||||||||| ||||| ||||||||||||||||| ||||||||
Sbjct 155 GTGTCCTATACTGACCAAGTTTCAGAAAGACTGCGCCACTCCTACACCGTACCTACGCAA 214
Query 177 CGTAGCCAACGCCATTGCTGATGACATGCGAGCTGGTCTAGCTGTTGAAGGAGGAGGAGA 236
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 215 CGTAGCCAACGCCATTGCTGATGACATGCGAGATGGTCTAGCTGTTGAAGGAGGAGGAGA 274
Query 237 TCTCGATATGATCTTGACTTATGTTGACGCTTTGCCTTCTGGGAATGAGGAAGGGTTGTT 296
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 275 TCTCGAGATGATCTTGACTTTTGTTGACGCTTTGCCTTCTGGGAATGAGGAAGGGTTGTT 334
Query 297 CTATGCATTGGATTTAGGAGGTACAAATTTTCGGGTGCGTAGCGTGCAATTAGGAGGAAA 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 335 CTATGCATTGGATTTAGGAGGTACAAATTTTCGGGTGCGTAGCGTGCAATTAGGAGGAAA 394
Query 357 GAAAAAGCGAGTCATAGCTACCGAATCTGAACAAATATCTATTCCTCAAAAGCTTATGAT 416
|||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 395 GAAAGAGCGAGTCTTAGCTACCGAATCTGAACAAATATCTATTTCTCAAAAGCTTATGAT 454
Query 417 TGGTACAAGAGAGGAACTCTTT-GGGTTCATTGCTGCAAAGCTTGCAAGCTTTGTTGCAA 475
||||||||| ||||| || ||| |||||||||||| |||||||||||| ||||||||||
Sbjct 455 TGGTACAAGTGAGGAGCT-TTTCGGGTTCATTGCTTCAAAGCTTGCAAATTTTGTTGCAA 513
Query 476 AGGAGAAGCCGAG-TCGGTTTCGGTTAGAAGAAGGGAGGAAAAGGGAGATAGGGTTTACC 534
|||||||||| || |||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 514 AGGAGAAGCC-AGGTCGGTTTCTTTTAGAAGAAGGGAGGAAAAGGGAGTTAGGGTTTACC 572
Query 535 TTTTCATTCCCTGTGAAGCAAACTTCTATTGATTCTGGCACACTGATCAAGTGGACTAAA 594
||||||||||||||||||||||| ||||||||||| |||||| | | |||||||||||||
Sbjct 573 TTTTCATTCCCTGTGAAGCAAACCTCTATTGATTCAGGCACATTAAGCAAGTGGACTAAA 632
Query 595 GGCTTTAAAGTGTCTGGAATGGAAGGAAAAAACGTGGTTGCTTGTTTAAATAAAGCTATG 654
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 633 GGCTTTAAAGTGTCTGGAATGGAAGGAAAAAATGTGGTTGCTTGTTTAAATGAAGCTATG 692
Query 655 GAAGCTCATGGACTCGACATGCGAGTTTCTGCTCTCGTAAATGATGGAGTGGGAACATTA 714
||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 693 GAAGCACATGGACTCGATATGCGAGTTTCTGCTCTTGTAAATGATGGAGTGGGAACATTA 752
Query 715 GCTGGAGCAAGGTATTCGGAAGAGGATGTGATGATCGGTGTGATTCTTGGCACTGGAACC 774
|||||||||||||||| ||| |||||||||||| |||||||||||||||||||||| |||
Sbjct 753 GCTGGAGCAAGGTATTGGGATGAGGATGTGATGGTCGGTGTGATTCTTGGCACTGGGACC 812
Query 775 AATGCTTGTTATGTAGAGCAGAAGCATGCAATTCCTAAACTCCAAAGCAATTCTTCTTCT 834
||||||||||||||||| ||||| ||||||||||||||||||| |||||| |||||||||
Sbjct 813 AATGCTTGTTATGTAGAACAGAAACATGCAATTCCTAAACTCCGAAGCAAATCTTCTTCT 872
Query 835 GGAACAACGATCATAAACACGGAGTGGGGAGGATTCTCTAAGGTTCTTCCGCAAACCATT 894
|||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||
Sbjct 873 GGAACAACGATCATAAACACTGAGTGGGGAGGGTTCTCTAAGATTCTTCCGCAAACCATT 932
Query 895 TTTGACCAAGAGATGGATGCGA-ATAGCCCGAATCCTGGTGAACATTTATATGAGAAGAT 953
||||||| ||||||||||| || | |||| ||||||||||||||||||||||||||||||
Sbjct 933 TTTGACCTAGAGATGGATGAGACA-AGCCTGAATCCTGGTGAACATTTATATGAGAAGAT 991
Query 954 GATCTCAGGGATGTACCTTGGTGAAATTGTAAGAAGGGTTTTGCTCCAAATGTGTGAAAC 1013
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 992 GATCTCAGGGATGTACCTTGGTGAAATTGTAAGGAGGGTTTTGCTCCATATGTGTGAAAC 1051
Query 1014 TAGTGACTTGTTCGGACAATTCGTTCCTGCCAAACTCTCCACTCCCTTTGA-ACTCAGGA 1072
|||||||||||| ||||| |||| ||||||||||||||||||||| |||| ||||||||
Sbjct 1052 TAGTGACTTGTTTGGACACTTCGCTCCTGCCAAACTCTCCACTCC-TTTGGCACTCAGGA 1110
Query 1073 CCGAGCATCTATGCGAAATGCAAGCGGACACTACAGATGATCTTCAG-ACGGTTGGATCA 1131
|||||||||||||| ||||||||| ||||| |||||||||||||| | | | ||||||||
Sbjct 1111 CCGAGCATCTATGCAAAATGCAAGAGGACAATACAGATGATCTTCGGGATG-TTGGATCA 1169
Query 1132 GTCCTATACAACATTTTAGAGGTAGAGGCAAATCTGAAGGAAAGGAGGAGAGTAGTGGAA 1191
|||||||| || ||||||| |||||||| ||| |||| | |||||||||||| ||||||
Sbjct 1170 ATCCTATACGACTTTTTAGATGTAGAGGCGAATATGAATGCAAGGAGGAGAGTGGTGGAA 1229
Query 1192 GTGTGTGACACAGTAGTGAAACGCGGAGGGCGTCTAGCAGGAGCTGGTATAGTGGCAATT 1251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1230 GTGTGTGACACAGTAGTGAAACGCGGAGGGCGTCTAGCAGGAGCTGGTATAGTGGCAATT 1289
Query 1252 CTGGAGAAAATTGAAAAAGAGACCAAAAGAATGGGTTCTGGTAAAAGAACCGTTGTGGCT 1311
|||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1290 CTGGAGAAGATTGAAAAAGATACCAAAAGAATGGGTTCAGGTAAAAGAACCGTTGTGGCT 1349
Query 1312 ATGGACGGTGCACTATACGAGAAGTACCCACAGTATCGAGAGTATATGCAAGATGCACTA 1371
|||||||||||||| || |||||||||||||| |||||| ||||||||||||| ||||||
Sbjct 1350 ATGGACGGTGCACTGTATGAGAAGTACCCACAATATCGACAGTATATGCAAGACGCACTA 1409
Query 1372 GTCGAGCTTCTTGGCGATAAGCT---AAGTCACATTGCGATCAAACATACCAAAGACGTG 1428
||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 1410 GTCGAGCTTCTTGGCCATAAGCTTGCAAGTCACGTTGCGATCAAACATACCAAAGACGTG 1469
Query 1429 TCTGGGCTCGGTGCTGCTCTTTTGGCCGCCACTAACTCCATTTACTAG 1476
|||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1470 TCTGGGCTCGGTGCTGCTCTTTTGGCGGCCACTAACTCCATTTACTAG 1517
> AT1G47860.1 | Symbols: | transposable element gene | chr1:17620677-17630270
REVERSE LENGTH=9594
Length=9594
Score = 311 bits (168), Expect = 1e-83
Identities = 219/244 (90%), Gaps = 1/244 (0%)
Strand=Plus/Plus
Query 1233 AGCTGGTATAGTGGCAATTCTGGAGAAAATTGAAAAAGAGACCAAAAGAATGGGTTCTGG 1292
|||||||||||| |||||| ||||||| |||||| |||||||||||||||||| ||| ||
Sbjct 9345 AGCTGGTATAGTTGCAATTGTGGAGAAGATTGAAGAAGAGACCAAAAGAATGGATTCAGG 9404
Query 1293 TAAAAGAACCGTTGTGGCTATGGACGGTGCACTATACGAGAAGTACCCACAGTATCGAGA 1352
|||||||||||||||||||||||||||| |||| |||||||| ||||||||||||| | |
Sbjct 9405 TAAAAGAACCGTTGTGGCTATGGACGGTTCACTCTACGAGAACTACCCACAGTATCAACA 9464
Query 1353 GTATATGCAAGATGCACTAGTCGAGCTTCTTGGCGATAAGCTAAGTCACATTGCGATCAA 1412
||||||| |||| |||||||||||||||||||||||||| | |||| |||||| |||||
Sbjct 9465 GTATATGGAAGAAGCACTAGTCGAGCTTCTTGGCGATAATCGAAGTTACATTGTGATCAT 9524
Query 1413 ACATACCAAAGACGTGTCTGGGCTCGGTGCTGCTCTTTTGGCCGCCACTAACTCCATTTA 1472
|||| |||||||||| |||||||| ||||||||||||||||| || |||||||| |||||
Sbjct 9525 ACATGCCAAAGACGTATCTGGGCTTGGTGCTGCTCTTTTGGCTGCTACTAACTCTATTTA 9584
Query 1473 CTAG 1476
|||
Sbjct 9585 -TAG 9587
Score = 182 bits (98), Expect = 1e-44
Identities = 122/133 (92%), Gaps = 3/133 (2%)
Strand=Plus/Plus
Query 940 TTATATGAGAAGATGATCTCAGGGATGTACCTTGGTGAAATTGTAAGAAGGGTTTTGCTC 999
||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||
Sbjct 7175 TTATATGAGAAGATGGTCTCAGGGATGTACCTTGGTGAAATTGTGAGGAGGGTTTTGCTC 7234
Query 1000 CAAATGTGTGAAACTAGTGACTTGTTCGGACAATTCGTTCCTG-C--CAAACTCTCCACT 1056
||||||||||||||||||||||||||||| ||||||||||||| | ||| |||||||
Sbjct 7235 CAAATGTGTGAAACTAGTGACTTGTTCGGTCAATTCGTTCCTGGCGGCAATCTCTCCAAA 7294
Query 1057 CCCTTTGAACTCA 1069
||||||| |||||
Sbjct 7295 CCCTTTGCACTCA 7307
Score = 154 bits (83), Expect = 2e-36
Identities = 101/109 (93%), Gaps = 4/109 (4%)
Strand=Plus/Plus
Query 843 GATCATAAACACGGAGTGGGGAGGATTCTCTAAGGTTCTTCCGCAAACCATTTTTGACCA 902
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 6954 GATCATAAACACTGAGTGGGGAGGATTCTCTAAGGTTCTTCCGCAGACCATTTTTGACCA 7013
Query 903 AGAGATGGATGCG-AATAGCCCGAATCCTGGTGAACATTTATATGAGAA 950
||||||||||||| || |||||||||| |||||||||| || || ||||
Sbjct 7014 AGAGATGGATGCGGAA-AGCCCGAATCGTGGTGAACATGTA-AT-AGAA 7059
Score = 154 bits (83), Expect = 2e-36
Identities = 87/89 (98%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 1151 AGGTAGAGGCAAATCTGAAGGAAAGGAGGAGAGTAGTGGAAGTGTGTGACACAGTAGTGA 1210
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 8031 AGGTAGAGGCAAATCTGCAGGAAAGGAGGAGAGTGGTGGAAGTGTGTGACACAGTAGTGA 8090
Query 1211 AACGCGGAGGGCGTCTAGCAGGAGCTGGT 1239
|||||||||||||||||||||||||||||
Sbjct 8091 AACGCGGAGGGCGTCTAGCAGGAGCTGGT 8119
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72790790250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5