BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314229
Length=1248
Score E
Sequences producing significant alignments: (Bits) Value
AT1G47870.1 | Symbols: E2FC, ATE2F2, ATE2FC | winged-helix DNA-... 1589 0.0
> AT1G47870.1 | Symbols: E2FC, ATE2F2, ATE2FC | winged-helix DNA-binding
transcription factor family protein | chr1:17634788-17637770
FORWARD LENGTH=1553
Length=1553
Score = 1589 bits (860), Expect = 0.0
Identities = 960/1007 (95%), Gaps = 12/1007 (1%)
Strand=Plus/Plus
Query 1 ATGGCCGCGACATCAAACTCAGGCGAAGATCCGACTCTTTCTTATCACCACCACCGATCT 60
|||||||||||||||||||||||||||||||||||||| || | | |||| |||||||||
Sbjct 150 ATGGCCGCGACATCAAACTCAGGCGAAGATCCGACTCTCTC-T-T-ACCATCACCGATCT 206
Query 61 CCTTTTCGCTTCGAATTACTTCAATCTATCTCTTCCTCTGATCCTCGTTACGCTTCTCTA 120
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 207 CCTTTTCGCTTCGAATTACTTCAATCTATCTCTTCCTCTGATCCTCGTTACTCTTCTCTA 266
Query 121 ACTCCTTCTTCAACGAATCGACCTTTCTCAGTCTCTCAATCGCTTCCGAATTCTCAACAG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 267 ACTCCTTCTTCAACGAATCGACCTTTCTCAGTCTCTCAATCGCTTCCGAATTCACAACTG 326
Query 181 TCTCCTCTAATTTCATCTCACTGGGACGATTCTTACTCTCAAATCACTCAGAAAGTTCAA 240
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 327 TCTCCTCTAATTTCACCTCACTGGGACGATTCTTACTCTCAAATCACTCAGAAAGTTCAG 386
Query 241 AAGAGTAGAAAGAATCATCGAATTCAGCTGGGATCTATTGCAAACATGGCT---GGAGAA 297
||||||||||||||||||||||||||||| ||||||||||| |||||| || ||||||
Sbjct 387 AAGAGTAGAAAGAATCATCGAATTCAGCTTGGATCTATTGCCAACATGTCTGGAGGAGAA 446
Query 298 AGCATAGATATAGCTAAAGTAATAGTGAAACAAGAGTCGTCTCCTCAAGATATTAAACGT 357
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 447 AGCATAGATATAGCTAAAGTAATAGTGAAACAAGAGTCGTCTCCTCAAAATGTTAAACGT 506
Query 358 GTATACAACAAGTCAAA--G-GGTACTAAACAGTTAAAGGCCGGGAAACGAATGGCGAAT 414
||||||||||||||||| | |||||||||| ||||||||| ||||||||||||||||||
Sbjct 507 GTATACAACAAGTCAAAGGGTGGTACTAAACTGTTAAAGGCTGGGAAACGAATGGCGAAT 566
Query 415 GGCGAAGCACAAAATGGTGGCTTAAATGGAACTAGTATTAACTGCCGTTATGATAGTTCT 474
||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 567 GGCGAAGTGCAAAATGGTGGCTTAAATGGAGCTAGTATTAACTGCCGTTATGACAGTTCT 626
Query 475 TTAGGGTTATTGACAAAGAAATTCGTCAAGTTGATCCAGGAAGCTGAGGATGGAACACTT 534
|||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 627 TTAGGGTTGTTGACAAAAAAATTCGTGAAGTTGATCCAGGAAGCTGAGGATGGAACACTT 686
Query 535 GATCTTAACTATTGTGCAGATGTTTTGGAGGTACAAAAAAGAAGGATATATGATATTACA 594
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 687 GACCTTAACTATTGTGCAGTTGTTTTGGAGGTACAAAAAAGAAGGATATATGATATTACA 746
Query 595 AATGTCCTTGAAGGAATTGGATTGATAGAGAAAACTACAAAGAACCATATCCGCTGGAAG 654
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 747 AATGTCCTTGAAGGAATTGGATTGATAGAGAAAACTACAAAGAATCATATCCGCTGGAAG 806
Query 655 GGTGCTGAAAATCTTGGACAGAAGGACCTGGGAGATCAAATTGCAAGGCTTAAGTCAGAA 714
|||||||| ||||||||||| ||||||||||||||||||||| | |||||||||||||||
Sbjct 807 GGTGCTGACAATCTTGGACAAAAGGACCTGGGAGATCAAATTTCTAGGCTTAAGTCAGAA 866
Query 715 GTAGAAAGTATGCAATCTGAGGAAAGCAGGTTGGATGATCTTATAAGGGAAAGACAAGAA 774
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 867 GTAGAGAGTATGCAATCTGAGGAAAGCAGGTTGGATGATCTTATAAGGGAACGACAAGAA 926
Query 775 GCTCTCAGATCCTTGGAGGAAGATGAATATTGTAGAAGGTACATGTTTATGACGGAGGAA 834
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 927 GCTCTCAGATCCTTGGAGGAAGATGACTACTGTAGAAGGTACATGTTTATGACGGAGGAA 986
Query 835 GATATAACAAGTCTCCCACGGTTTCAGAACCAGACATTACTAGCAATTAAAGCTCCTACA 894
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 987 GATATAACGAGTCTCCCACGGTTTCAGAACCAGACATTACTAGCAATTAAAGCTCCTACA 1046
Query 895 GCTAGTTACATCGAAGTTCCAGATCCTGATGAGATGAGATTTCCGCAACGACAGTACCGG 954
|||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||
Sbjct 1047 GCTAGTTACATCGAAGTTCCAGATCCTGATGAGATGAGTTTTCCGCAAC-A--GTACCGG 1103
Query 955 ATGGTGATTAGGAGTAGGATGGGGCCGATTGATGTCTATCTTTTAAG 1001
||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1104 ATGGTGATTAGGAGTAGAATGGGGCCGATTGATGTCTATCTTTTAAG 1150
Score = 305 bits (165), Expect = 5e-82
Identities = 184/193 (95%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 1057 AGCAAATACAAAGGAAACAGTGGGGAAACAAGTGACAAGTTGGGTCATGAGTCTGATCAA 1116
||||||||||||||| |||||| ||||||||| |||||||||||| ||||||||||||||
Sbjct 1149 AGCAAATACAAAGGAGACAGTGCGGAAACAAGCGACAAGTTGGGTAATGAGTCTGATCAA 1208
Query 1117 AAAGCTCCA-TCTGGAGTGGACACTCCTTCCTTGAAAATAGTAACTTCAGATACTGATTT 1175
||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1209 AAAGCTCCAGT-TGGAGTAGACACTCCTTCCTTGAAAATAGTAACTTCAGATACTGATTT 1267
Query 1176 AAAAGCAGATTACTGGTTTGAGTCAGATGCAGAGGTGAGCCTCACAGATTTATGGAGCAA 1235
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1268 AAAAGCAGATTACTGGTTCGAGTCAGATGCAGAGGTGAGCCTCACAGATTTATGGAGCAA 1327
Query 1236 CTTCAGCAGCTGA 1248
||||| |||||||
Sbjct 1328 CTTCAACAGCTGA 1340
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61345065990
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5