BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314235
Length=966
Score E
Sequences producing significant alignments: (Bits) Value
AT1G47990.1 | Symbols: ATGA2OX4, GA2OX4 | gibberellin 2-oxidase... 1607 0.0
AT3G17200.1 | Symbols: | transposable element gene | chr3:5869... 110 3e-23
> AT1G47990.1 | Symbols: ATGA2OX4, GA2OX4 | gibberellin 2-oxidase
4 | chr1:17698655-17700834 FORWARD LENGTH=966
Length=966
Score = 1607 bits (870), Expect = 0.0
Identities = 934/966 (97%), Gaps = 0/966 (0%)
Strand=Plus/Plus
Query 1 ATGGTGAAAGGGTCCCAGAAAATCGTGGCCGTAGATCAAGACATAGCAATAATAGATATG 60
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 1 ATGGTGAAAGGGTCCCAGAAAATCGTGGCCGTAGATCAAGACATACCAATAATAGACATG 60
Query 61 TCGCAGGAGAGATCACAAGTGTCGATGCAGATAGTCAAAGCCTGTGAGACTCTCGGCTTC 120
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 61 TCGCAGGAGAGATCACAAGTGTCGATGCAGATAGTCAAAGCCTGCGAGAGTCTCGGCTTC 120
Query 121 TTCAAAGTGATCAACCATGGCGTTGACCAAACCACCATCTCAAGGATGGAGCAAGAGTCT 180
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 TTCAAAGTCATCAACCATGGCGTTGACCAAACCACCATCTCAAGAATGGAGCAAGAGTCT 180
Query 181 ATAAACTTCTTTGCTAAACCGGCTCACGAGAAGAAATCAGTCCGACCGGTTAACCAGCCT 240
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 181 ATAAACTTCTTTGCTAAACCGGCTCACGAGAAGAAATCTGTCCGACCAGTTAACCAGCCT 240
Query 241 TTCCGGTATGGGTTTAGAGACATTGGCCTCAACGGTGACTCTGGTGAGGTCGAGTATTTG 300
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 TTCCGGTATGGTTTTAGAGACATTGGACTCAACGGTGACTCTGGTGAGGTCGAGTATTTG 300
Query 301 CTGTTTCACACTAACGACCCTGCCTTTCGTTCTCAGCTCTCCTTCAGCTCGACAGTGAAT 360
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 301 CTGTTTCACACTAACGACCCTGCCTTTCGCTCTCAGCTCTCCTTCAGCTCGGCAGTGAAT 360
Query 361 TGTTACATAGAAGCAGTTAAGCAGTTGGCTCGTGAGATCTTAGATCTGACGGCTGAGGGA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TGTTACATAGAAGCAGTTAAGCAGTTGGCTCGTGAGATCTTAGATCTGACGGCTGAGGGA 420
Query 421 CTTCATGTCCCACCTCACAGTTTCAGTAGGTTAATCAGCTCCGTCGATAGTGACTCCGTT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CTTCATGTCCCACCTCACAGTTTCAGTAGGTTAATCAGCTCCGTCGATAGTGACTCCGTT 480
Query 481 CTGAGAGTGAATCATTATCCACCGTCCGATCAATTCTTTGGTGGAGCCAATCTTTCTGAC 540
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 481 CTGAGAGTGAATCATTATCCACCGTCCGATCAATTCTTTGGTGAAGCCAATCTTTCTGAC 540
Query 541 AAATCTGTGTCACTGACAAGAGTTGGCTTCGGAGAACACACCGACCCTCAGATCTTAACA 600
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 541 CAATCTGTGTCACTGACAAGAGTTGGCTTCGGAGAACACACCGACCCTCAGATTTTAACA 600
Query 601 GTTCTTAGATCTAACGGTGTAGGAGGACTCCAAGTGTCAAATTCAGATGGCATGTGGGTT 660
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 601 GTTCTTAGATCTAACGGTGTAGGAGGGCTCCAAGTGTCCAATTCAGATGGCATGTGGGTT 660
Query 661 TCTGTCTCCCCTGACCCTTCAGCTTTCTGCGTCAATGTAGGAGACTTGTTACAGGTGATG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TCTGTCTCCCCTGACCCTTCAGCTTTCTGCGTCAATGTAGGAGACTTGTTACAGGTGATG 720
Query 721 ACGAACGGGAGATTTATAAGTGTAAGGCATAGAGCATTGACCTACGGAGAAGAAAGTCGG 780
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 721 ACGAACGGGAGATTTATAAGTGTAAGGCATAGAGCATTGACCTACGGAGAAGAAAGCCGG 780
Query 781 CTCTCGACGGCGTACTTCGCTGGACCACCGCTTCAAGCGAAGATTGGGCCTCTTTCGGCC 840
|| || ||||||||||| || |||||||||||||| |||||||||||||||||||||||
Sbjct 781 CTATCCACGGCGTACTTTGCCGGACCACCGCTTCAGGCGAAGATTGGGCCTCTTTCGGCG 840
Query 841 ATGGTCACGATGATGAATCAGCCACGGTTATACCAAACATTTACATGGGGCGAGTACAAG 900
||||| | || |||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 841 ATGGTTATGACGATGAATCAGCCACGGTTGTACCAAACATTTACTTGGGGCGAGTACAAG 900
Query 901 AAACTTGCGTACTCGCTACGACTCGAGGATAGCCGTTTAGACATGTTTCGTACATGTAAG 960
|||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 901 AAACGTGCGTACTCTCTACGACTTGAGGATAGCCGTTTAGACATGTTTCGTACATGTAAG 960
Query 961 GACTAG 966
||||||
Sbjct 961 GACTAG 966
> AT3G17200.1 | Symbols: | transposable element gene | chr3:5869723-5870852
FORWARD LENGTH=1130
Length=1130
Score = 110 bits (59), Expect = 3e-23
Identities = 99/117 (85%), Gaps = 7/117 (6%)
Strand=Plus/Plus
Query 1 ATGGTGAAAGG-GTCCCAGAAAATCGTGGCCGTAGATCAAGACATAGCAATAATAGATAT 59
|||||| |||| ||||||||||||||||||||||||||||||||| | | ||||||||
Sbjct 97 ATGGTG-AAGGAGTCCCAGAAAATCGTGGCCGTAGATCAAGACATTCCCGTGATAGATAT 155
Query 60 GTCGC--AGGAGAGATCACAAGTGTCGATGCAGATAGTCAAAGCCTGTGAGAC-TCT 113
||| | || |||| |||| |||||| ||||||||||| ||||| || ||||| |||
Sbjct 156 GTC-CTTAG-AGAGGTCACGAGTGTCCATGCAGATAGTAAAAGCTTGCGAGACCTCT 210
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47270332327
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5