BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg314235 Length=966 Score E Sequences producing significant alignments: (Bits) Value AT1G47990.1 | Symbols: ATGA2OX4, GA2OX4 | gibberellin 2-oxidase... 1607 0.0 AT3G17200.1 | Symbols: | transposable element gene | chr3:5869... 110 3e-23 > AT1G47990.1 | Symbols: ATGA2OX4, GA2OX4 | gibberellin 2-oxidase 4 | chr1:17698655-17700834 FORWARD LENGTH=966 Length=966 Score = 1607 bits (870), Expect = 0.0 Identities = 934/966 (97%), Gaps = 0/966 (0%) Strand=Plus/Plus Query 1 ATGGTGAAAGGGTCCCAGAAAATCGTGGCCGTAGATCAAGACATAGCAATAATAGATATG 60 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| Sbjct 1 ATGGTGAAAGGGTCCCAGAAAATCGTGGCCGTAGATCAAGACATACCAATAATAGACATG 60 Query 61 TCGCAGGAGAGATCACAAGTGTCGATGCAGATAGTCAAAGCCTGTGAGACTCTCGGCTTC 120 |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| Sbjct 61 TCGCAGGAGAGATCACAAGTGTCGATGCAGATAGTCAAAGCCTGCGAGAGTCTCGGCTTC 120 Query 121 TTCAAAGTGATCAACCATGGCGTTGACCAAACCACCATCTCAAGGATGGAGCAAGAGTCT 180 |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 121 TTCAAAGTCATCAACCATGGCGTTGACCAAACCACCATCTCAAGAATGGAGCAAGAGTCT 180 Query 181 ATAAACTTCTTTGCTAAACCGGCTCACGAGAAGAAATCAGTCCGACCGGTTAACCAGCCT 240 |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| Sbjct 181 ATAAACTTCTTTGCTAAACCGGCTCACGAGAAGAAATCTGTCCGACCAGTTAACCAGCCT 240 Query 241 TTCCGGTATGGGTTTAGAGACATTGGCCTCAACGGTGACTCTGGTGAGGTCGAGTATTTG 300 ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 241 TTCCGGTATGGTTTTAGAGACATTGGACTCAACGGTGACTCTGGTGAGGTCGAGTATTTG 300 Query 301 CTGTTTCACACTAACGACCCTGCCTTTCGTTCTCAGCTCTCCTTCAGCTCGACAGTGAAT 360 ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| Sbjct 301 CTGTTTCACACTAACGACCCTGCCTTTCGCTCTCAGCTCTCCTTCAGCTCGGCAGTGAAT 360 Query 361 TGTTACATAGAAGCAGTTAAGCAGTTGGCTCGTGAGATCTTAGATCTGACGGCTGAGGGA 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 TGTTACATAGAAGCAGTTAAGCAGTTGGCTCGTGAGATCTTAGATCTGACGGCTGAGGGA 420 Query 421 CTTCATGTCCCACCTCACAGTTTCAGTAGGTTAATCAGCTCCGTCGATAGTGACTCCGTT 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 CTTCATGTCCCACCTCACAGTTTCAGTAGGTTAATCAGCTCCGTCGATAGTGACTCCGTT 480 Query 481 CTGAGAGTGAATCATTATCCACCGTCCGATCAATTCTTTGGTGGAGCCAATCTTTCTGAC 540 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 481 CTGAGAGTGAATCATTATCCACCGTCCGATCAATTCTTTGGTGAAGCCAATCTTTCTGAC 540 Query 541 AAATCTGTGTCACTGACAAGAGTTGGCTTCGGAGAACACACCGACCCTCAGATCTTAACA 600 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 541 CAATCTGTGTCACTGACAAGAGTTGGCTTCGGAGAACACACCGACCCTCAGATTTTAACA 600 Query 601 GTTCTTAGATCTAACGGTGTAGGAGGACTCCAAGTGTCAAATTCAGATGGCATGTGGGTT 660 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct 601 GTTCTTAGATCTAACGGTGTAGGAGGGCTCCAAGTGTCCAATTCAGATGGCATGTGGGTT 660 Query 661 TCTGTCTCCCCTGACCCTTCAGCTTTCTGCGTCAATGTAGGAGACTTGTTACAGGTGATG 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 TCTGTCTCCCCTGACCCTTCAGCTTTCTGCGTCAATGTAGGAGACTTGTTACAGGTGATG 720 Query 721 ACGAACGGGAGATTTATAAGTGTAAGGCATAGAGCATTGACCTACGGAGAAGAAAGTCGG 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 721 ACGAACGGGAGATTTATAAGTGTAAGGCATAGAGCATTGACCTACGGAGAAGAAAGCCGG 780 Query 781 CTCTCGACGGCGTACTTCGCTGGACCACCGCTTCAAGCGAAGATTGGGCCTCTTTCGGCC 840 || || ||||||||||| || |||||||||||||| ||||||||||||||||||||||| Sbjct 781 CTATCCACGGCGTACTTTGCCGGACCACCGCTTCAGGCGAAGATTGGGCCTCTTTCGGCG 840 Query 841 ATGGTCACGATGATGAATCAGCCACGGTTATACCAAACATTTACATGGGGCGAGTACAAG 900 ||||| | || |||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 841 ATGGTTATGACGATGAATCAGCCACGGTTGTACCAAACATTTACTTGGGGCGAGTACAAG 900 Query 901 AAACTTGCGTACTCGCTACGACTCGAGGATAGCCGTTTAGACATGTTTCGTACATGTAAG 960 |||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 901 AAACGTGCGTACTCTCTACGACTTGAGGATAGCCGTTTAGACATGTTTCGTACATGTAAG 960 Query 961 GACTAG 966 |||||| Sbjct 961 GACTAG 966 > AT3G17200.1 | Symbols: | transposable element gene | chr3:5869723-5870852 FORWARD LENGTH=1130 Length=1130 Score = 110 bits (59), Expect = 3e-23 Identities = 99/117 (85%), Gaps = 7/117 (6%) Strand=Plus/Plus Query 1 ATGGTGAAAGG-GTCCCAGAAAATCGTGGCCGTAGATCAAGACATAGCAATAATAGATAT 59 |||||| |||| ||||||||||||||||||||||||||||||||| | | |||||||| Sbjct 97 ATGGTG-AAGGAGTCCCAGAAAATCGTGGCCGTAGATCAAGACATTCCCGTGATAGATAT 155 Query 60 GTCGC--AGGAGAGATCACAAGTGTCGATGCAGATAGTCAAAGCCTGTGAGAC-TCT 113 ||| | || |||| |||| |||||| ||||||||||| ||||| || ||||| ||| Sbjct 156 GTC-CTTAG-AGAGGTCACGAGTGTCCATGCAGATAGTAAAAGCTTGCGAGACCTCT 210 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47270332327 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5