BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314240
Length=1113
Score E
Sequences producing significant alignments: (Bits) Value
AT1G48060.1 | Symbols: | F-box and associated interaction doma... 1254 0.0
AT1G47730.1 | Symbols: | F-box and associated interaction doma... 331 8e-90
> AT1G48060.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:17728295-17729448 FORWARD LENGTH=1062
Length=1062
Score = 1254 bits (679), Expect = 0.0
Identities = 954/1083 (88%), Gaps = 34/1083 (3%)
Strand=Plus/Plus
Query 39 GAGAAAAAGATGTAAATCTTCATCGTCGTTGTCCATACCTCTCGATATAACCACAGAGAT 98
||| |||||| ||||||| |||||||||||||||||||||||||||||| ||||||| ||
Sbjct 6 GAGGAAAAGAAGTAAATCATCATCGTCGTTGTCCATACCTCTCGATATAGCCACAGATAT 65
Query 99 ATTCTTAAAGCTACCTGCGAAATCTGTCGCAAGGTTTCGTTGTGTTTCGAAGCTTTGGTC 158
|||||||| ||| |||||||| ||||||| ||||||| ||||||| |||||| ||||||
Sbjct 66 ATTCTTAAGGCTTCCTGCGAAGTCTGTCGTAAGGTTTAGTTGTGTGGCGAAGCATTGGTC 125
Query 159 ATCAATCCCCACCTCTCGATATTTCACCACCTCGTTCGAATCTCGACCTAACCTTTTGTT 218
||||||| ||||| ||| ||||||||||| |||||||||| |||||||||| ||||||||
Sbjct 126 ATCAATCACCACCGCTCCATATTTCACCAACTCGTTCGAAACTCGACCTAATCTTTTGTT 185
Query 219 CTTCTTCAAAGAAGGC-AATAGGTTCTTTGTTGTCACGATTCCTAAACCTAATCGGAGAC 277
||||||||||||| || | |||||||||||||||||| |||||||||||||||||||||
Sbjct 186 CTTCTTCAAAGAA-GCTGACAGGTTCTTTGTTGTCACGGTTCCTAAACCTAATCGGAGAC 244
Query 278 CGAACGAGTCCTTTTCTTATACTTCTTCTGAGATTCTTGATAGTTACCAAATACCCTATC 337
||||||||||| ||||| ||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 245 CGAACGAGTCCGTTTCTCATACTTCTTCTCAGATTCTTGATAGTTACCAAACACCCTATC 304
Query 338 CAAAACATAGCTGCCTCACCATTAAAACCGAGTCGGTCCACGGTTTGATCTGCTTTCAGA 397
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 305 CAAAACATAGCTGCTTCACCATTAAAACCGAGTCGGTCCACGGTTTGATCTGCTTCCAGA 364
Query 398 GAGGAACAAAACCTACAGTCTGGAACCCTATTATGAGAAAGTTCAAACCTTTACGCAAAC 457
|||| ||||| |||| ||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 365 GAGGTACAAAGCCTATAGTTTGGAACCCTACTATGAGAAAGTTCAAACCTTTACGCAAAC 424
Query 458 CGGACAAGAGCTGGGAGAGTTTAACTGTCTTTTTAGGGTATGATCCAGTCGAACGTAAGC 517
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| | ||
Sbjct 425 CGGACAAGAGCTGGGAGAGTTTAACAGTCTTTTTAGGGTATGATCCACTCGAACGGACGC 484
Query 518 ACAAAGTAGTGTCCATGACTTGTGATCAAGCTTCTGATGAGTGTCGTG-TTTTAACGTTG 576
||||||||||| ||||| | |||||| ||||||||||||||||| | | ||||||| |||
Sbjct 485 ACAAAGTAGTGGCCATGCCGTGTGATAAAGCTTCTGATGAGTGTAG-GATTTTAACATTG 543
Query 577 GGATCAG-A--TCAAGAATCATGGAGAACGGTCAAAACCAACTACAAGCATCTCCCTTTC 633
|| |||| | |||||||||||||||||| ||||||||||| || ||||||| |||| |
Sbjct 544 GGTTCAGCAGATCAAGAATCATGGAGAACAGTCAAAACCAATTATAAGCATCACCCTAGC 603
Query 634 CGTGGCAAGCGCAAAGACAATTATGGACCGTGCAGATGCATCAACGGT-TTCCATGCGAT 692
|||||||| |||||| ||||||||||||| |||||||||||||||||| ||| | ||
Sbjct 604 CGTGGCAATCGCAAAAACAATTATGGACCATGCAGATGCATCAACGGTGTTC--T---AT 658
Query 693 AAGATTACCATGGGATGAGGAGTTT-TCGCCAAAGATGATGATATCTTATAAAGGGAAGT 751
| ||| | | | ||| | || ||| || | || || || |||||||
Sbjct 659 A---TTATC-TAGCC-GAG-A-TTGATCGTCA----TC--GAC-TC--ATC--GGGAAGT 700
Query 752 TAGCTTATCTCGGTCATTCCAATGGGACGAATAGTCTTCCTATGTGGGTTTTAGAGGATG 811
| |||| ||||||||||||||||| || |||||||||||| |||||||||||||||| ||
Sbjct 701 TCGCTTTTCTCGGTCATTCCAATGTGAAGAATAGTCTTCCCATGTGGGTTTTAGAGGGTG 760
Query 812 CAAAGAAGGGTGAATGGTCGACTTATAACTTTTTACCTCTTTCTCACTATGATCGGAGTT 871
||||||||| |||||||| |||||||| ||||||||||||||||||||||||||| |||
Sbjct 761 AAAAGAAGGGCGAATGGTCAACTTATAATTTTTTACCTCTTTCTCACTATGATCGGCGTT 820
Query 872 CAGAGACCCATTTCAAGCTAATAGGTATCACCAATGATGGTGAATTGATTTACGTACCAT 931
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 821 TAGAGTTCCATTTCAAGCTAATAGGTATCACCAATGATGGTGAATTGATTTACGTACCAA 880
Query 932 ACATGGTATTCGAATCTTTTGATGTCATATATATTGATCCAATAAGAAAGACGTTTAGGA 991
||| ||||||| || | ||||| || ||||| ||||||||||||||||||||||||||
Sbjct 881 ACACGGTATTCAAAACATTTGAAGTTATATACATTGATCCAATAAGAAAGACGTTTAGCC 940
Query 992 GAGTCAAATACAAAGGAGTTGCAGATAAAGGTTTTAGACAACGCAATGGACTTGAAGAAC 1051
||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 941 TTGTCAAATACGAAGGAGTTGCAGATAAAGGTTTTAGACAACGCAATGGACTTGGAGAAG 1000
Query 1052 ATAAACCTTTACGTGGGATACAATATTCACCCAATCATGTTGACACTCT-CATATCTTTG 1110
||||||||||||||||||| ||||||||||||||||| ||||| ||||| | | ||||||
Sbjct 1001 ATAAACCTTTACGTGGGATTCAATATTCACCCAATCACGTTGAGACTCTAC-TGTCTTTG 1059
Query 1111 TGA 1113
|||
Sbjct 1060 TGA 1062
> AT1G47730.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:17563931-17565106 REVERSE LENGTH=1176
Length=1176
Score = 331 bits (179), Expect = 8e-90
Identities = 362/447 (81%), Gaps = 26/447 (6%)
Strand=Plus/Plus
Query 676 AACGGTTTCCATGCGATAAG-ATTACCATGGGATGAGGAGTTTT-CGCCAAAGATGATGA 733
||||| ||| ||| ||| || ||||||||||||||| || |||| || ||||||||
Sbjct 743 AACGG-TTCGATGTGAT-AGAATTACCATGGGATGA-GAATTTTGGGCTTGTGATGATGA 799
Query 734 TATCTTATAAAGGGAA-GTTAGCTTATCTCGG--TCATTCCAATGGGACGAATAGTC-TT 789
| ||||||||| |||| |||||||| ||| || ||| | | ||| || |||||||| ||
Sbjct 800 TGTCTTATAAA-GGAAGGTTAGCTTGTCTTGGTTTCAAT-C-ATGAGAAGAATAGTCGTT 856
Query 790 CCTATGTGGGTTTTAGAGGATGCAAAGAAGGGTGAATGGTCGACTTATAACTTTTTACCT 849
| ||||||||||| ||| ||| | || || | ||||||||| | ||| || |||||||
Sbjct 857 -CAATGTGGGTTTTGGAGAATGTAGAGCAGCGCGAATGGTCGTGTCATACCTATTTACCT 915
Query 850 CTTTCTCACTATGA-TCGGAGTTCAGAGACCCATTTCAAGCTAATAGGTATCACCAATGA 908
||||||| ||||| ||| ||| |||| | ||||||| |||| ||||||||| |||||
Sbjct 916 ATTTCTCATTATGAGCCGG-GTTTGGAGAACTATTTCAATCTAACAGGTATCACTAATGA 974
Query 909 TGGTGAATTGATTTACGTACCATACA-TGGTATTCGAATC-TTTTGATGTCATATATATT 966
||||||| |||||||||||||| ||| | || ||||| | |||| |||| |||||| ||
Sbjct 975 TGGTGAACTGATTTACGTACCAAACACT-GTGCTCGAA-CGTTTTCATGTTATATATTTT 1032
Query 967 GATCCAATAAGAAAGACGTTTAGGAGAGTCAAATACAAAGGAGTTGCAGATAAAGGTTTT 1026
||| |||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 1033 GATGCAATAAGAGAGACGTTTAGAAGAGTCATATACAAAGGAGTTGCAGATAAAGGTTTT 1092
Query 1027 AGACAACGCAATGGACTTGAAGAACATAAACCTTTACGTGGGA-TACAATATT-CACCCA 1084
||| |||||||||||||||||| || || ||| ||||| | | | || | || | ||||
Sbjct 1093 CGACTACGCAATGGACTTGAAGA-CA-AA-CCTATACGTAG-ACTCCACTTTTTC-CCCA 1147
Query 1085 ATCATGTTGACACTCTCATATCTTTGT 1111
|||| |||| |||||||| |||||||
Sbjct 1148 ATCACATTGAAACTCTCATGTCTTTGT 1174
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54567992415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5