BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg314249

Length=270
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G48140.1 | Symbols:  | dolichol-phosphate mannosyltransferas...   416    5e-116


> AT1G48140.1 | Symbols:  | dolichol-phosphate mannosyltransferase-related 
| chr1:17782042-17784211 FORWARD LENGTH=689
Length=689

 Score =  416 bits (225),  Expect = 5e-116
 Identities = 255/270 (94%), Gaps = 0/270 (0%)
 Strand=Plus/Plus

Query  1    ATGAAGCATATAGTAAAGATCTTGAGCTTGTTGGTGGCAATCTCTGCCTTCTGGATTGGT  60
            ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct  123  ATGAAGCATATAGTAAAGATCTTGAGCCTGTTGGTGGCTATCTCTGCCTTCTGGATTGGT  182

Query  61   CTTTTGCAGGCTGCAATTATTCCTCGAAGCCATACATGGTTGCTACCGATCTACTTTGTA  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  183  CTTTTGCAGGCTGCAATTATTCCTCGAAGCCATACATGGTTGCTACCGATCTACTTTGTT  242

Query  121  GTATCCCTTGGATGCTATGGTCTATTAATGGTTGGAATCGGACTAATGCAATTTCCTACC  180
            |||||||| ||||||||||| ||||||||||||||| |||| || ||||| |||||||| 
Sbjct  243  GTATCCCTCGGATGCTATGGCCTATTAATGGTTGGAGTCGGGCTCATGCAGTTTCCTACT  302

Query  181  TGTCCCCAAGAAGCAGTTCTGTTGCAAAAGGATATTGCAGAGGCCAAGGACTTCTTCAAG  240
            || |||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||
Sbjct  303  TGCCCCCAAGAAGCAGTTCTGCTGCAGAAGGATATTGCAGAGGCTAAGGACTTCTTCAAG  362

Query  241  CACAGAGGGGTAGATGTTGGATCGAATTGA  270
            |||| |||||||||||||||||||||||||
Sbjct  363  CACAAAGGGGTAGATGTTGGATCGAATTGA  392



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12365866254


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5