BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314252
Length=579
Score E
Sequences producing significant alignments: (Bits) Value
AT1G48175.1 | Symbols: emb2191 | Cytidine/deoxycytidylate deami... 798 0.0
> AT1G48175.1 | Symbols: emb2191 | Cytidine/deoxycytidylate deaminase
family protein | chr1:17790507-17792331 FORWARD LENGTH=890
Length=890
Score = 798 bits (432), Expect = 0.0
Identities = 525/566 (93%), Gaps = 21/566 (4%)
Strand=Plus/Plus
Query 14 AAGAGGACCATTGTGAGGATTCTCTTACTTATATGGGTTTTGCTCTGCACCAGGCTAAAC 73
|||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||
Sbjct 81 AAGAGGACCATTGTGAGGATTCTCATAATTATATGGGTTTTGCTCTGCATCAGGCTAAAC 140
Query 74 TTGCTCTGGAGGCACTTGAAGTTCCTGTTGGATGTGTTCTTCTTGAGGATGGTAAGGTCA 133
||||||||||||| ||||||||||| || ||||||||| |||||||||| ||||||||||
Sbjct 141 TTGCTCTGGAGGCTCTTGAAGTTCCCGTGGGATGTGTTTTTCTTGAGGACGGTAAGGTCA 200
Query 134 TTGCTTCAGGGCGAAACCGAACAAATGAGACACGCAATGCCACAAGACATGCTGAGATGG 193
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 201 TTGCTTCAGGGCGAAACCGAACAAATGAGACACGCAATGCCACAAGACATGCAGAGATGG 260
Query 194 AAGCAATTGATCAACTTGTCGGACAGTGGCAGGAAGATGGACTCTCACCTTCACAAGTCG 253
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 261 AAGCAATTGATCAGCTTGTCGGACAGTGGCAGAAAGATGGACTCTCACCTTCACAAGTCG 320
Query 254 CTGAGAAATTCTCGAAATGCATTCTTTACGTAACATGTGAACCTTGCATAATGTGTGCAT 313
||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 321 CTGAGAAATTCTCGAAATGTGTTCTTTATGTAACATGTGAACCTTGCATAATGTGTGCAT 380
Query 314 CGGCCTTATCGTTTCTCGGTATAAAGGAAGTGTATTATGGATGTCCAAATGATAAATTTG 373
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 381 CGGCCTTATCGTTTCTCGGTATCAAGGAAGTGTATTATGGATGTCCAAATGATAAATTTG 440
Query 374 GGGGATGTGGTTCCATTTTGTCGCTTCACTTGGGCAGTTCTCAGTCGTCAGATATCATTG 433
||||||||||||||||||||||||||||||| || || || | |
Sbjct 441 GGGGATGTGGTTCCATTTTGTCGCTTCACTT----AG------GT----AG-T------G 479
Query 434 AGGAAGCTCAAAGAGGAAAAGGGTATAAATGCAGAGGAGGAATAATGGCAGAAGAAGCTG 493
|||||||||||||||||||||| || || |||||||||||||||||||||||||||||||
Sbjct 480 AGGAAGCTCAAAGAGGAAAAGGATACAAGTGCAGAGGAGGAATAATGGCAGAAGAAGCTG 539
Query 494 TCTCTCTTTTCAAATGTTTCTATGAGCAAGGCAATCCCAACGCCCCAAAGCCACACCGCC 553
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 540 TCTCTCTTTTCAAATGTTTCTATGAGCAAGGCAATCCCAACGCTCCAAAGCCACACCGCC 599
Query 554 CTGTAGTTCAAAGAGAGAGGACTTGA 579
|||| |||||||||||||||||||||
Sbjct 600 CTGTTGTTCAAAGAGAGAGGACTTGA 625
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27829717438
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5