BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg314252 Length=579 Score E Sequences producing significant alignments: (Bits) Value AT1G48175.1 | Symbols: emb2191 | Cytidine/deoxycytidylate deami... 798 0.0 > AT1G48175.1 | Symbols: emb2191 | Cytidine/deoxycytidylate deaminase family protein | chr1:17790507-17792331 FORWARD LENGTH=890 Length=890 Score = 798 bits (432), Expect = 0.0 Identities = 525/566 (93%), Gaps = 21/566 (4%) Strand=Plus/Plus Query 14 AAGAGGACCATTGTGAGGATTCTCTTACTTATATGGGTTTTGCTCTGCACCAGGCTAAAC 73 |||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||| Sbjct 81 AAGAGGACCATTGTGAGGATTCTCATAATTATATGGGTTTTGCTCTGCATCAGGCTAAAC 140 Query 74 TTGCTCTGGAGGCACTTGAAGTTCCTGTTGGATGTGTTCTTCTTGAGGATGGTAAGGTCA 133 ||||||||||||| ||||||||||| || ||||||||| |||||||||| |||||||||| Sbjct 141 TTGCTCTGGAGGCTCTTGAAGTTCCCGTGGGATGTGTTTTTCTTGAGGACGGTAAGGTCA 200 Query 134 TTGCTTCAGGGCGAAACCGAACAAATGAGACACGCAATGCCACAAGACATGCTGAGATGG 193 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 201 TTGCTTCAGGGCGAAACCGAACAAATGAGACACGCAATGCCACAAGACATGCAGAGATGG 260 Query 194 AAGCAATTGATCAACTTGTCGGACAGTGGCAGGAAGATGGACTCTCACCTTCACAAGTCG 253 ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 261 AAGCAATTGATCAGCTTGTCGGACAGTGGCAGAAAGATGGACTCTCACCTTCACAAGTCG 320 Query 254 CTGAGAAATTCTCGAAATGCATTCTTTACGTAACATGTGAACCTTGCATAATGTGTGCAT 313 ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| Sbjct 321 CTGAGAAATTCTCGAAATGTGTTCTTTATGTAACATGTGAACCTTGCATAATGTGTGCAT 380 Query 314 CGGCCTTATCGTTTCTCGGTATAAAGGAAGTGTATTATGGATGTCCAAATGATAAATTTG 373 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 381 CGGCCTTATCGTTTCTCGGTATCAAGGAAGTGTATTATGGATGTCCAAATGATAAATTTG 440 Query 374 GGGGATGTGGTTCCATTTTGTCGCTTCACTTGGGCAGTTCTCAGTCGTCAGATATCATTG 433 ||||||||||||||||||||||||||||||| || || || | | Sbjct 441 GGGGATGTGGTTCCATTTTGTCGCTTCACTT----AG------GT----AG-T------G 479 Query 434 AGGAAGCTCAAAGAGGAAAAGGGTATAAATGCAGAGGAGGAATAATGGCAGAAGAAGCTG 493 |||||||||||||||||||||| || || ||||||||||||||||||||||||||||||| Sbjct 480 AGGAAGCTCAAAGAGGAAAAGGATACAAGTGCAGAGGAGGAATAATGGCAGAAGAAGCTG 539 Query 494 TCTCTCTTTTCAAATGTTTCTATGAGCAAGGCAATCCCAACGCCCCAAAGCCACACCGCC 553 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 540 TCTCTCTTTTCAAATGTTTCTATGAGCAAGGCAATCCCAACGCTCCAAAGCCACACCGCC 599 Query 554 CTGTAGTTCAAAGAGAGAGGACTTGA 579 |||| ||||||||||||||||||||| Sbjct 600 CTGTTGTTCAAAGAGAGAGGACTTGA 625 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27829717438 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5