BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314253
Length=735
Score E
Sequences producing significant alignments: (Bits) Value
AT1G48180.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1000 0.0
> AT1G48180.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G51670.1);
Has 39 Blast hits to 39 proteins in 2 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:17792449-17793717
REVERSE LENGTH=764
Length=764
Score = 1000 bits (541), Expect = 0.0
Identities = 673/735 (92%), Gaps = 15/735 (2%)
Strand=Plus/Plus
Query 1 ATGGCACTCCCCCCACCCTATGATCCCAATTTCAAATTGGCATTCTCTCTCGGCAGTATC 60
|||||||| ||||||||||||||||||||||||||| ||||||||||| ||| |
Sbjct 1 ATGGCACT---CCCACCCTATGATCCCAATTTCAAATTTGCATTCTCTCTTGGC---A-- 52
Query 61 GCAGAGATTGAGAATCACCAAGATCACGATGAATCTGCTTCTGCTGCTGTCGTAGCGGTT 120
| ||||| ||| ||||||||| ||||||||||||||||||||||||| |||||| ||
Sbjct 53 -C---GATTGCGAAACACCAAGATTACGATGAATCTGCTTCTGCTGCTGTTGTAGCGCTT 108
Query 121 GATCTGATAAGCTCTGCACGGTTTGCACTTAAGCTGGATAGTGTCTATACTGAGTACTCG 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 109 GATCTGATAAGCTCTGCACGGTTTGCACTTAAGCTGGATAGTGTCTATACTGAGTACTCT 168
Query 181 GCTAAGTATTTGGTGGACAATGCTGGTGGCTCACACAGGGGGCGCAAGCTCACTGTCAAA 240
||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 169 GCTAAGTATGTGGTGGACAATGCTGCTGGCTCACACAGTGGGCGCAAGCTCACTGTCAAA 228
Query 241 GACTGTCTTGAGTTTGCGATAAACAAAGGCGGCATACCAAAAGCAGAAGACTGGCCACGC 300
||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||
Sbjct 229 GACTGTCTTGAGTTTGCCTTAAACAAAGGCGGCATACCGAAAGCAGAAGATTGGCCACGC 288
Query 301 TTGGGATCTGTGATAAAGCCCCCATCATCGTATAAACCTGACCTCGTTTCGATGAAAGGA 360
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 289 TTGGGATCTGTGATAACGCCCCCATCATCGTATAAACCTGATCTCGTTTCGATGAAAGGA 348
Query 361 CAAGTGATTGAGCCTAAGACTATGGAGGAAGCATGTGACTTGTTGGTGCATCAACCAGTA 420
||||||||||||||| ||||||| ||||||||||||||| || ||||| |||||||||||
Sbjct 349 CAAGTGATTGAGCCTCAGACTATTGAGGAAGCATGTGACATGGTGGTGGATCAACCAGTA 408
Query 421 GGAGCAAAACTGCATGTGTTCATGCCACACATTGAACTTCAACAAGACGTAAGTGCTATA 480
||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 409 GGAGCAAAATTGCATGTGTTCAAGCCACACATTGAACTTCAACAAGACGCAAGTGCTATA 468
Query 481 GCTGGAATTTACTGTGGCACGTCAGGTGAGCCAGCTAGCTATGTCGGACTTAGAGATGCG 540
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 469 ACTGGCATTTACTGTGGCACGTCAGGTGAGCCAGCCAGCTATGTCGGACTTAGAGATGCC 528
Query 541 ATCATAATTGGAGCCGAGAATATCCAAGGGAAGTCCATTGCAACAGTGAAGGTATGGTAC 600
||||| |||||| |||||| |||||||||||||| |||| ||| |||||||||||||||
Sbjct 529 ATCATCGTTGGAGTCGAGAAGATCCAAGGGAAGTCTATTGGAACTGTGAAGGTATGGTAC 588
Query 601 AAGAAGAAGTTCATATTTCTCAAAGTGGCTATGAGCAGGTGGTTTCAGTTATACTCTCCG 660
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 589 AAGAAG---TTCATATTTCTGAAAGTGGCTATGAGCAGGTGGTTTCAGTTATACTCTCCG 645
Query 661 GATGACACACAGAAGGGCATAGAGCAAACACATTATCTTGTTGACTTTTGTGTCCCACGC 720
|||| |||||| | ||||||| ||| |||| |||| |||||||| |||||||||||||||
Sbjct 646 GATGGCACACACACGGGCATAAAGCGAACAGATTACCTTGTTGATTTTTGTGTCCCACGC 705
Query 721 CTATCCATCAATTAA 735
|||||||| |||||
Sbjct 706 CTATCCATGGATTAA 720
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35666244370
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5