BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314258
Length=1128
Score E
Sequences producing significant alignments: (Bits) Value
AT1G48230.1 | Symbols: | nodulin MtN21 /EamA-like transporter ... 1762 0.0
AT3G17430.1 | Symbols: | Nucleotide-sugar transporter family p... 1016 0.0
> AT1G48230.1 | Symbols: | nodulin MtN21 /EamA-like transporter
family protein | chr1:17805761-17808885 FORWARD LENGTH=1760
Length=1760
Score = 1762 bits (954), Expect = 0.0
Identities = 1075/1129 (95%), Gaps = 26/1129 (2%)
Strand=Plus/Plus
Query 1 ATGGCGAAGATGATAAACAAGACGCTTGTACTTACCTATATCTACTTACTGATCTACATT 60
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 376 ATGGCGAAGATGATAAACAAGACGCTTGTACTTACATATATCTACTTACTAATCTACATT 435
Query 61 CTTCTTTCTTCTGGAGTTATACTATATAACAAGGTGATTGCGGAAACTACTTTACTTTGG 120
||||||||||||||||||||| | | | | | ||| | | |||
Sbjct 436 ATTCTTTCTTCTGGAGTTATAC----T----A--T-A---C---AAC-A----A--GTGG 471
Query 121 GTTCTATCTCCGAAATACTTCAATTTTCCACTTCCTATAACATTGACAATGATCCATATG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 GTTCTATCTCCGAAATACTTCAATTTTCCACTTCCTATAACATTGACAATGATCCATATG 531
Query 181 GGATTTTCTGGATTTGTGGCTTTCCTTCTTATTCGAGTTTTCAAGGTTGTCTCTCCTGTT 240
|||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||
Sbjct 532 GGATTTTCTGGATTCGTGGCTTTCCTTCTTATTCGGGTATTCAAGGTTGTCTCTCCTGTT 591
Query 241 AAAATGACTTTTGAAATATATGTGACCTGTGTGGTGCCTATAAGTGCATTCTTTGCATCC 300
||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 592 AAAATGACTTTCGAAATATATGTGACATGTGTGGTGCCTATAAGCGCATTCTTTGCATCC 651
Query 301 AGTCTCTGGTTTGGAAATACTGCATATTTGCACATTTCAGTTGCTTTCATACAGATGCTC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 AGTCTCTGGTTTGGAAATACTGCATATTTGCACATTTCAGTTGCTTTCATACAGATGCTC 711
Query 361 AAAGCACTAATGCCGGTAGCAACATTTCTTATGGCCGTTGTTTGTGGCACGGACAAAGCA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 AAAGCACTAATGCCGGTAGCAACATTTCTTATGGCCGTTGTTTGTGGCACGGACAAAGCA 771
Query 421 AGATGTGACGTGTTCATGAACATGGTGCTGGTCAGTGTTGGAGTTGTAGTATCTTCCTAT 480
|| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 772 AGGTGTGACGTGTTCATGAACATGGTGCTGGTGAGTGTTGGAGTTGTAGTATCCTCCTAT 831
Query 481 GGGGAAATTAATTTCAATGTAATCGGCACGGTCTACCAGGTCATGGGAATCTTTGCTGAA 540
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 832 GGGGAAATTAATTTCAATGTAATCGGCACGGTCTACCAGGTCATGGGAATATTTGCTGAA 891
Query 541 GCACTTAGACTGGTGCTAACTCAAGTTCTTCTTCAGAAGAAGGGCTTGACATTGAACCCA 600
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 892 GCACTTAGACTGGTGCTAACTCAAGTTCTTCTTCAGAAAAAGGGCTTGACGTTGAACCCA 951
Query 601 GTCACCAGCTTATACTATATAGCTCCATGCAGCTTTGTTTTCCTGTCCTTGCCTTGGTAT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 GTCACCAGCTTATACTATATAGCTCCATGCAGCTTTGTTTTCCTGTCCTTGCCTTGGTAT 1011
Query 661 GTACTGGAGAAACCGAATATAGATGTCTCGCAGATCCAATTCAACTTCTGGATCTTTTTC 720
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 GTGCTGGAGAAACCAAATATAGATGTCTCGCAGATCCAATTCAACTTCTGGATCTTTTTC 1071
Query 721 TCAAACGCTCTCTGCGCACTTGCCTTAAACTTCTCCATATTCTTAGTAATCGGAAGAACA 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1072 TCAAACGCTCTCTGCGCACTTGCCTTAAACTTCTCCATATTCTTAGTAATCGGAAGAACA 1131
Query 781 GGCGCTGTAACAATCCGGGTTGCTGGGGTTCTCAAAGACTGGATTCTCATAGCCCTCTCC 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 GGCGCTGTAACAATCCGGGTTGCTGGGGTTCTCAAAGACTGGATTCTCATAGCCCTCTCC 1191
Query 841 ACTGTCATATTTCCTGAGTCCACAATCACTGGGCTGAATATTACTGGATATGCAATAGCG 900
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1192 ACTGTCATATTTCCTGAGTCCACAATCACTGGGCTGAATATAACTGGATATGCTATAGCG 1251
Query 901 CTCTGTGGTGTTGTAATGTACAATTACATAAAAATCAAGGATGTAAAAGCGATTCAACCA 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1252 CTCTGTGGTGTTGTAATGTACAATTACATAAAAATCAAGGATGTAAAAGCGATTCAACCA 1311
Query 961 ACCAGC-GACAGCCTCCCAGATCGAATCACGAAGGATTGGAAGGAGAAGAATTCTTCAGA 1019
|||| | ||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1312 ACCA-CTGACAGCCTCCCAGATCGAATCACGAAGGACTGGAAGGAGAAGAATTCGTCAGA 1370
Query 1020 TGGGGGGAGCCCCAGAGGATTAGAGCTTAACGATGAAGAAGCCCCTCTGATAACATCGCG 1079
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1371 TGGGGGGAGCCCCAGAGGATTGGAGCTTAACGATGAAGAAGCCCCTCTGATAACGTCGCG 1430
Query 1080 GTTGTCGCATATCGGGCGGACTCAGCTTGGAAACCACACCGCCGTCTGA 1128
|||||||||||| || ||||||||||||||||||||||| || ||||||
Sbjct 1431 GTTGTCGCATATTGGCCGGACTCAGCTTGGAAACCACACGGCAGTCTGA 1479
> AT3G17430.1 | Symbols: | Nucleotide-sugar transporter family
protein | chr3:5965923-5969233 FORWARD LENGTH=1775
Length=1775
Score = 1016 bits (550), Expect = 0.0
Identities = 879/1032 (85%), Gaps = 45/1032 (4%)
Strand=Plus/Plus
Query 1 ATGGCGAAGATGATAAACAAGACGCTTGTACTT-ACCTATATCTACTTACTGATCTACAT 59
||||| |||||||||||||||||||||||| || || ||||||||||| |||||||||||
Sbjct 377 ATGGCAAAGATGATAAACAAGACGCTTGTA-TTAACTTATATCTACTTGCTGATCTACAT 435
Query 60 TCTTCTTTCTTCTGGAGTTATACTATATAACAAGGTGATTGCGGAAACTACTTTACTTTG 119
| | |||||||| |||||||||| | || | | || || | ||
Sbjct 436 TATACTTTCTTCAGGAGTTATAC----T------GT-A---C---AA-TA----A--GTG 471
Query 120 GGTTCTATCTCCGAAATACTTCAATTTTCCACTTCCTATAACATTGACAATGATCCATAT 179
|||| |||| || ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 472 GGTTTTATCCCCAAAATACTTCAATTTTCCACTTCCTATAACGCTGACAATGATCCATAT 531
Query 180 GGGATTTTCTGGATTTGTGGCTTTCCTTCTTATTCGAGTTTTCAAGGTTGTCTCTCCTGT 239
||| ||| ||||||| |||||||||||||||||||| || ||||||||||| |||| ||
Sbjct 532 GGGGTTTGCTGGATTCGTGGCTTTCCTTCTTATTCGTGTCTTCAAGGTTGTAGCTCCGGT 591
Query 240 TAAAATGACTTTTGAAATATATGTGACCTGTGTGGTGCCTATAAGTGCATTCTTTGCATC 299
||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 592 TAAAATGACATTTGAAATATATGCAACCTGTGTGGTACCTATAAGTGCATTCTTTGCATC 651
Query 300 CAGTCTCTGGTTTGGAAATACTGCATATTTGCACATTTCAGTTGCTTTCATACAGATGCT 359
|||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 652 AAGTCTCTGGTTTGGAAATACTGCATATTTGCACATTTCTGTTGCCTTCATTCAGATGCT 711
Query 360 CAAAGCACTAATGCCGGTAGCAACATTTCTTATGGCCGTTGTTTGTGGCACGGACAAAGC 419
||||| |||||||| ||||| |||||| | ||||| |||||||||||||| |||||| |
Sbjct 712 GAAAGCTCTAATGCCAGTAGCGACATTTATCATGGCAGTTGTTTGTGGCACTGACAAACC 771
Query 420 AAGATGTGACGTGTTCAT-GAACATGGTGCTGGTCAGTGTTGGAGTTGT-AGTATCTTCC 477
||| ||||| |||||| | ||||||| |||||||||||||||||||||| | |||||||
Sbjct 772 AAGGTGTGATGTGTTC-TCGAACATGTTGCTGGTCAGTGTTGGAGTTGTGA-TATCTTCT 829
Query 478 TATGGGGAAATTAATTTCAATGTAATCGGCACGGTCTACCAGGTCATGGGAATCTTTGCT 537
|||||||||||| ||||||| || | ||||| ||||| ||||| | || |||||||||
Sbjct 830 TATGGGGAAATTCATTTCAACATAGTTGGCACAGTCTATCAGGTGACAGGCATCTTTGCT 889
Query 538 GAAGCACTTAGACTGGTGCTAACTCAAGTTCTTCTTCAGAAGAAGGGCTTGACATTGAAC 597
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 890 GAAGCACTTAGACTGGTGCTAACTCAAGTTCTTCTCCAGAAGAAGGGTTTGACATTGAAC 949
Query 598 CC-AGTCACCAGCTTATACTATATAGCTCCATGCAGCTTTGTTTTCCTGTCCTTGCCTTG 656
|| | | |||||||| || || |||||||| ||||| |||||||| ||| |||| |||||
Sbjct 950 CCTATT-ACCAGCTTGTATTACATAGCTCCCTGCAGTTTTGTTTTTCTGGCCTTACCTTG 1008
Query 657 GTATGTACTGGAGAAACCGA-ATATAGATGTCTCGCAGATCCAATTCAACTTCTGGATCT 715
|||||| | |||||||| | | || || || || ||||||||||||||||||||||| |
Sbjct 1009 GTATGTGTTAGAGAAACCCACA-ATGGAAGTTTCACAGATCCAATTCAACTTCTGGATAT 1067
Query 716 TTTTCTCAAACGCTCTCTGCGCACTTGCCTTAAACTTCTCCATATTCTTAGTAATCGGAA 775
||||||| || ||||| || || |||||||| |||||||||||||||||||| || || |
Sbjct 1068 TTTTCTCCAATGCTCTATGTGCTCTTGCCTTGAACTTCTCCATATTCTTAGTCATTGGGA 1127
Query 776 GAACAGGCGCTGTAACAATCCGGGTTGCTGGGGTTCTCAAAGACTGGATTCTCATAGCCC 835
||||||| || ||||| |||||||| ||||| |||||||||||||||||||| |||||||
Sbjct 1128 GAACAGGTGCAGTAACCATCCGGGTGGCTGGTGTTCTCAAAGACTGGATTCTTATAGCCC 1187
Query 836 TCTCCACTGTCATATTTCCT-GAGTCCACAATCACTGGGCTGAATATTACTGGATATGCA 894
|||| || ||||| ||||| |||||||||||||||||| ||||||| |||||||| |||
Sbjct 1188 TCTCAACCGTCAT-TTTCCCCGAGTCCACAATCACTGGGTTGAATATCACTGGATACGCA 1246
Query 895 ATAGCGCTCTGTGGTGTTGTAATGTACAATTACATAAAAATCAAGG-ATGTAAAAGCGAT 953
|||||||| |||||||| || |||||||||||||||||| | |||| |||| || ||| |
Sbjct 1247 ATAGCGCTATGTGGTGTCGTCATGTACAATTACATAAAAGT-AAGGGATGTGAAGGCG-T 1304
Query 954 -TCAACCAACCAGC-GACAGCCTCCCAGATCGAATCACGAAGGATTGGAAG--G-AGAAG 1008
||||||||| ||| ||||| || ||||||||||||| ||||| | ||| | |||||
Sbjct 1305 CTCAACCAAC-AGCTGACAGTCTTCCAGATCGAATCAATAAGGAGTACAAGATGGAGAAG 1363
Query 1009 AATTCTTCAGAT 1020
|| ||||| |||
Sbjct 1364 AAGTCTTCGGAT 1375
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55321000590
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5