BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314259
Length=858
Score E
Sequences producing significant alignments: (Bits) Value
AT1G48240.1 | Symbols: ATNPSN12, NPSN12 | novel plant snare 12 ... 902 0.0
AT3G17440.1 | Symbols: NPSN13, ATNPSN13 | novel plant snare 13 ... 320 1e-86
> AT1G48240.1 | Symbols: ATNPSN12, NPSN12 | novel plant snare 12
| chr1:17809007-17811895 REVERSE LENGTH=1253
Length=1253
Score = 902 bits (488), Expect = 0.0
Identities = 522/538 (97%), Gaps = 4/538 (1%)
Strand=Plus/Plus
Query 323 TGATTAAGGAACTCAACTCTTATGTTGCACTAAGAAAAACGTACTTGAATACACTCGGCA 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 502 TGATTAAGGAACTCAACTCTTATGTTGCACTAAGAAAAACGTACTTGAATACACTCGGCA 561
Query 383 ACAAGAAAGTTGAACTTTTTGATA-TGGGAGCTGGAGTCAGCGGTGAACCCACAGCTGAA 441
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 562 ACAAGAAAGTTGAACTTTTTGATACTGG-AGCTGGAGTCAGCGGTGAACCCACAGCTGAA 620
Query 442 GAAAACGTCCAAATGGCTTCATCAATGTCAAACCAAGAGCTTGTCGATGCTGGAATGAAA 501
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 621 GAAAACGTCCAAATGGCTTCAACAATGTCAAACCAAGAGCTTGTCGATGCTGGAATGAAA 680
Query 502 AGGATGGACGAGACTGACCAGGCTATTGAACGCTCTAAACAGGTTGTGCATCAGACGA-T 560
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
Sbjct 681 AGGATGGACGAGACTGACCAGGCTATTGAACGTTCTAAACAGGTTGTGCATCAGAC-ACT 739
Query 561 CGAAGTTGGCACTCAAACTGCATCTAATTTAAAGGGACAGACAGATCAAATGGGTCGCGT 620
||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct 740 CGAAGTTGGCACTCAAACTGCATCTAACTTAAAGGGACAGACGGATCAAATGGGCCGCGT 799
Query 621 TGTAAACGACCTAGACACAATTCAGTTCTCTATCAAGAAAGCTTCGCAGCTGGTGAAAGA 680
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 800 TGTAAACGACCTAGACACAATTCAGTTCTCTCTTAAGAAAGCTTCGCAGCTGGTGAAAGA 859
Query 681 GATAGGAAGACAGGTGGCTACTGATAAATGCATAATGGCGTTCCTGTTTCTGATTGTATG 740
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 860 GATAGGAAGACAGGTAGCTACAGATAAATGCATAATGGCGTTCCTGTTTCTGATTGTCTG 919
Query 741 TGGTGTTATAGCTATAATCGTTGTGAAGATCGTGAACCCAAACAACAAAGACATCAGAGA 800
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 920 TGGTGTTATAGCTATAATCATTGTGAAGATCGTGAACCCAAACAACAAAGACATCAGAGA 979
Query 801 CATCCCTGGACTAGCTCCTCCAGCGCAATCAAGAAAGCTCTTGTACTTCAGAGAATAG 858
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 980 CATCCCTGGACTAGCTCCTCCAGCGCAATCGAGAAAGCTCTTGTACTTCAGAGAATAG 1037
Score = 455 bits (246), Expect = 3e-127
Identities = 258/264 (98%), Gaps = 0/264 (0%)
Strand=Plus/Plus
Query 1 ATGGCGTCTGACTTGCCGATGAGCCCTCATTTGGAGCAGATTCACGGAGAAATCCGTGAC 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 ATGGCGTCTGAATTGCCGATGAGCCCTCATTTGGAGCAGATTCACGGAGAAATCCGTGAC 299
Query 61 CATTTCCGAGCCCTCGCAAATGGCTTTCAGAGGTTGGATAAGATCAAGGATTCTAATAGA 120
||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||
Sbjct 300 CATTTCCGAGCCCTCGCGAATGGCTTCCAGAGGTTGGATAAGATCAAGGATTCTAGTAGA 359
Query 121 CAAAGCAAGCAACTCGAAGAACTTGCTGAGAAGATGAGAGACTGTAAAAGGTTGGTTAAG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CAAAGCAAGCAACTCGAAGAACTTGCTGAGAAGATGAGAGACTGTAAAAGGTTGGTTAAG 419
Query 181 GAGTTTGATCGTGAACTCAAAGATGGGGAAGCTCGAAATTCTCCTGAAGTAAATAAGCAG 240
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 420 GAGTTTGATCGTGAACTCAAAGATGGGGAAGCTCGAAATTCTCCTCAAGTAAATAAGCAA 479
Query 241 TTGAATGATGAGAAACAATCTATG 264
||||||||||||||||||||||||
Sbjct 480 TTGAATGATGAGAAACAATCTATG 503
> AT3G17440.1 | Symbols: NPSN13, ATNPSN13 | novel plant snare 13
| chr3:5969565-5972502 REVERSE LENGTH=1366
Length=1366
Score = 320 bits (173), Expect = 1e-86
Identities = 227/253 (90%), Gaps = 4/253 (2%)
Strand=Plus/Plus
Query 19 ATGAGCCCTCATTTGGAGCAGATTCACGGAGAAATCCGTGACCATTTCCGAGCCCTCGCA 78
||||||||||| ||||||||||| || || |||||||||||||||||||||||||||||
Sbjct 231 ATGAGCCCTCAATTGGAGCAGATCCATGGCGAAATCCGTGACCATTTCCGAGCCCTCGCG 290
Query 79 AATGGCTTTC-AGAGGTTGGATAAGATCAAGGATTCTAA-TAGACAAAGCAAGCAACTCG 136
||||| |||| |||||||||||||||| |||||||| || |||||||||||| ||||| |
Sbjct 291 AATGG-TTTCCAGAGGTTGGATAAGATTAAGGATTC-AACTAGACAAAGCAAACAACTTG 348
Query 137 AAGAACTTGCTGAGAAGATGAGAGACTGTAAAAGGTTGGTTAAGGAGTTTGATCGTGAAC 196
|||||||| |||| ||||||||||| |||||||| ||||| || ||||| || |||||||
Sbjct 349 AAGAACTTACTGACAAGATGAGAGAGTGTAAAAGATTGGTCAAAGAGTTCGACCGTGAAC 408
Query 197 TCAAAGATGGGGAAGCTCGAAATTCTCCTGAAGTAAATAAGCAGTTGAATGATGAGAAAC 256
|||| |||| ||||||| ||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 409 TCAAGGATGAGGAAGCTAGAAATTCTCCTGAAGTAAATAAGCAATTGAACGATGAGAAAC 468
Query 257 AATCTATGTTCAA 269
|||||||| ||||
Sbjct 469 AATCTATGATCAA 481
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41845044451
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5