BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg314261 Length=1113 Score E Sequences producing significant alignments: (Bits) Value AT1G48268.1 | Symbols: | pseudogene of F-box family protein | ... 798 0.0 AT3G52320.1 | Symbols: | F-box and associated interaction doma... 80.5 3e-14 > AT1G48268.1 | Symbols: | pseudogene of F-box family protein | chr1:17826622-17827824 REVERSE LENGTH=1168 Length=1168 Score = 798 bits (432), Expect = 0.0 Identities = 618/703 (88%), Gaps = 32/703 (5%) Strand=Plus/Plus Query 3 GGATGTGGTGACAGAGATTCTTACGAGATTGCCT-TCTAAAACCCTAATGAGATTCAAGT 61 |||||||||||||||||||||||||||||| ||| | ||||||||||||| ||||||||| Sbjct 87 GGATGTGGTGACAGAGATTCTTACGAGATTCCCTGT-TAAAACCCTAATG-GATTCAAGT 144 Query 62 GCGTCTCAAAGCTCTGGTCATCTCTCAT-C-CACT-C----TCCATACTTGACCAGCCGT 114 ||||||||||||||||||||||| |||| | | || | ||||||||| ||||| ||| Sbjct 145 GCGTCTCAAAGCTCTGGTCATCTATCATACGCTCTCCATAGTCCATACTTTACCAGTCGT 204 Query 115 TTCCTTACGGTCCCATCTCAACGAATTTACATTTGTTTATCACACTACGAGGACTACCGT 174 ||| ||| |||||||||||||||||||||||||||| ||||||| | ||||||||||||| Sbjct 205 TTCATTAAGGTCCCATCTCAACGAATTTACATTTGTGTATCACATTTCGAGGACTACCGT 264 Query 175 CGCTCTGAAATCCTAACTTTATG-TCCATGCGCTACTAGTCCATCTTCCTCCTTTGTTGT 233 | |||| |||||||| | ||| | ||||| |||||||||||||||||||||| | |||| Sbjct 265 CCCTCTAAAATCCTATCATTA-GCTCCATCCGCTACTAGTCCATCTTCCTCC--T-TTGT 320 Query 234 TGACCACGATCTGACCATCCAAAATAGGGGAGGCCAGATCTTACAAAATCTTTGTGGCTT 293 | | | ||||||||| | ||||||||||| ||||||||||||| ||| ||||||| Sbjct 321 T------G-T-TGACCATCCGAGATAGGGGAGGCAAGATCTTACAAAAACTTAGTGGCTT 372 Query 294 CATGTGCCACACATTTTTGAAAAAACCGCGAATGTATAACCCTACCACCAGACAACTTGT 353 ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 373 CATCTGCTACACATTTTTGAAAAAACCGCGAATGTATAACCCTACCACCAGACAACTTGT 432 Query 354 GACCTTTCCCACCATAAAATTAAAACCCAAAACCTCCGCTCCAGACAGATCTAGGTGGTG 413 |||||| |||||||||||||||||| |||||||||| |||||||| || || | |||||| Sbjct 433 GACCTTGCCCACCATAAAATTAAAAACCAAAACCTCGGCTCCAGAAAGGTCGAAGTGGTG 492 Query 414 TTACTATTTTGGACATGACCCTGTTAACAAACAGTACAAAGT-ACTCTGCTCAGTTG--G 470 |||||||||||||||| ||||| ||||| ||||||||||||| |||||||||||||| | Sbjct 493 TTACTATTTTGGACATTACCCTATTAACGAACAGTACAAAGTTACTCTGCTCAGTTGTCG 552 Query 471 --GG-TACCTTCGATG-TCGTCAGACCATTGGGTCTTTGACCTAAAACCTGGAGGTTCGT 526 || || || | || |||||||||||||||||||||||||||||||||||||||| Sbjct 553 TCGGATATTTTATTTTATCATCAGACCATTGGGTCTTTGACCTAAAACCTGGAGGTTCGT 612 Query 527 GGAAAAAGGTGACTTTGCCTCTAGCGGATTTTTATCCTCACCTTCCTCTTAGACAAGGAC 586 ||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||| Sbjct 613 GGAAAAAGGTGACTTTGCCTCCCGTGGACTTTTATCCTCACCTTCCTCTTAGACAAGGAC 672 Query 587 TGTCATTGAATGGGGTTATATATTACCTGGCAATG-ATTGATTGGTATAATTATGTGGTT 645 | |||||||||||||||||| |||||||||| || ||||||| || ||||||| ||||| Sbjct 673 TATCATTGAATGGGGTTATACATTACCTGGCT-TGGATTGATTCGTCTAATTATATGGTT 731 Query 646 GTGAGCTTCGACATCAGATCTGAAGAGTTCAAAATGATCCAAG 688 ||||||||||||||| ||| |||||| |||||||||||| ||| Sbjct 732 GTGAGCTTCGACATCGGATATGAAGAATTCAAAATGATCGAAG 774 Score = 448 bits (242), Expect = 7e-125 Identities = 315/349 (90%), Gaps = 9/349 (3%) Strand=Plus/Plus Query 722 AAGCTATCGAGAAGGTGTGTCTTATAGAATATGGCGGAAAAGTAACTGTTTTTGACCATA 781 |||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 772 AAGCCATCAAGAAGGTGTGTCTTATAGAATATGGCGGAAAAGTAACTGTTTTTTACCATA 831 Query 782 CCTATCTTGAAGACAAGGGTACAGTGAATTTATGGGTCCTAGAAGATGTCAGAAACAA-G 840 || |||||||||||||| ||||||||||||||||||| |||||||||||||| | ||| | Sbjct 832 CCGATCTTGAAGACAAGAGTACAGTGAATTTATGGGTTCTAGAAGATGTCAGGA-CAAAG 890 Query 841 GAATGGTTGGGGAAGACTCTGGTTTTGCAGCCTTGTCAGCTGCATTTGGTCAAAAACGTT 900 || ||||||| ||| |||||||||||||| ||||||| ||||||||||||||| |||||| Sbjct 891 GAGTGGTTGGCGAAAACTCTGGTTTTGCAACCTTGTCCGCTGCATTTGGTCAAGAACGTT 950 Query 901 A-ATT---T-GGAGGTAAAAGGTATAACTCAAAGTGGCAAGGTTATAATGACACCACATT 955 | ||| | |||| ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 951 AGATTGGATTGGAGTTAAAAGGTATAACTCAAAGTGGCAAGGTTATAATGACACCAGATT 1010 Query 956 ATTTGTTTTATAAGTTTTACATTCTTTGTTATGATCTGCAAAGTAATGATATGAGAGTGA 1015 |||||||| ||| ||| ||||||||||||| ||||||||||||||||||||| |||| || Sbjct 1011 ATTTGTTTGATATGTTGTACATTCTTTGTTGTGATCTGCAAAGTAATGATATTAGAGAGA 1070 Query 1016 TTAAAATCAAAGGTATACCTTACCTATGGCGT-CCTAAGAAGGGTGAAT 1063 |||||||||||||||||| ||||| || || |||||||||||||||| Sbjct 1071 TTAAAATCAAAGGTATACATTACC-ATTATGTTCCTAAGAAGGGTGAAT 1118 > AT3G52320.1 | Symbols: | F-box and associated interaction domains-containing protein | chr3:19403020-19404192 REVERSE LENGTH=1173 Length=1173 Score = 80.5 bits (43), Expect = 3e-14 Identities = 79/96 (82%), Gaps = 4/96 (4%) Strand=Plus/Plus Query 28 AGATTGCCTTCTAAAACCCTAATGAGATTCAAGTGCGTCTCAAAGCTCTGGTCAT-CTCT 86 |||||||| | ||| | || |||||||||||||||||||||||||||||| | | | || Sbjct 112 AGATTGCCGGCGAAATCTCTGATGAGATTCAAGTGCGTCTCAAAGCTCTGG-CTTTCCCT 170 Query 87 CATCCAC-TCTCCATACTTGACCAGCCGTTTCCTTA 121 ||| || |||| |||||| |||| ||||||| ||| Sbjct 171 TATC-ACCTCTCGATACTTCACCAACCGTTTCTTTA 205 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54567992415 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5