BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314261
Length=1113
Score E
Sequences producing significant alignments: (Bits) Value
AT1G48268.1 | Symbols: | pseudogene of F-box family protein | ... 798 0.0
AT3G52320.1 | Symbols: | F-box and associated interaction doma... 80.5 3e-14
> AT1G48268.1 | Symbols: | pseudogene of F-box family protein
| chr1:17826622-17827824 REVERSE LENGTH=1168
Length=1168
Score = 798 bits (432), Expect = 0.0
Identities = 618/703 (88%), Gaps = 32/703 (5%)
Strand=Plus/Plus
Query 3 GGATGTGGTGACAGAGATTCTTACGAGATTGCCT-TCTAAAACCCTAATGAGATTCAAGT 61
|||||||||||||||||||||||||||||| ||| | ||||||||||||| |||||||||
Sbjct 87 GGATGTGGTGACAGAGATTCTTACGAGATTCCCTGT-TAAAACCCTAATG-GATTCAAGT 144
Query 62 GCGTCTCAAAGCTCTGGTCATCTCTCAT-C-CACT-C----TCCATACTTGACCAGCCGT 114
||||||||||||||||||||||| |||| | | || | ||||||||| ||||| |||
Sbjct 145 GCGTCTCAAAGCTCTGGTCATCTATCATACGCTCTCCATAGTCCATACTTTACCAGTCGT 204
Query 115 TTCCTTACGGTCCCATCTCAACGAATTTACATTTGTTTATCACACTACGAGGACTACCGT 174
||| ||| |||||||||||||||||||||||||||| ||||||| | |||||||||||||
Sbjct 205 TTCATTAAGGTCCCATCTCAACGAATTTACATTTGTGTATCACATTTCGAGGACTACCGT 264
Query 175 CGCTCTGAAATCCTAACTTTATG-TCCATGCGCTACTAGTCCATCTTCCTCCTTTGTTGT 233
| |||| |||||||| | ||| | ||||| |||||||||||||||||||||| | ||||
Sbjct 265 CCCTCTAAAATCCTATCATTA-GCTCCATCCGCTACTAGTCCATCTTCCTCC--T-TTGT 320
Query 234 TGACCACGATCTGACCATCCAAAATAGGGGAGGCCAGATCTTACAAAATCTTTGTGGCTT 293
| | | ||||||||| | ||||||||||| ||||||||||||| ||| |||||||
Sbjct 321 T------G-T-TGACCATCCGAGATAGGGGAGGCAAGATCTTACAAAAACTTAGTGGCTT 372
Query 294 CATGTGCCACACATTTTTGAAAAAACCGCGAATGTATAACCCTACCACCAGACAACTTGT 353
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 373 CATCTGCTACACATTTTTGAAAAAACCGCGAATGTATAACCCTACCACCAGACAACTTGT 432
Query 354 GACCTTTCCCACCATAAAATTAAAACCCAAAACCTCCGCTCCAGACAGATCTAGGTGGTG 413
|||||| |||||||||||||||||| |||||||||| |||||||| || || | ||||||
Sbjct 433 GACCTTGCCCACCATAAAATTAAAAACCAAAACCTCGGCTCCAGAAAGGTCGAAGTGGTG 492
Query 414 TTACTATTTTGGACATGACCCTGTTAACAAACAGTACAAAGT-ACTCTGCTCAGTTG--G 470
|||||||||||||||| ||||| ||||| ||||||||||||| |||||||||||||| |
Sbjct 493 TTACTATTTTGGACATTACCCTATTAACGAACAGTACAAAGTTACTCTGCTCAGTTGTCG 552
Query 471 --GG-TACCTTCGATG-TCGTCAGACCATTGGGTCTTTGACCTAAAACCTGGAGGTTCGT 526
|| || || | || ||||||||||||||||||||||||||||||||||||||||
Sbjct 553 TCGGATATTTTATTTTATCATCAGACCATTGGGTCTTTGACCTAAAACCTGGAGGTTCGT 612
Query 527 GGAAAAAGGTGACTTTGCCTCTAGCGGATTTTTATCCTCACCTTCCTCTTAGACAAGGAC 586
||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||
Sbjct 613 GGAAAAAGGTGACTTTGCCTCCCGTGGACTTTTATCCTCACCTTCCTCTTAGACAAGGAC 672
Query 587 TGTCATTGAATGGGGTTATATATTACCTGGCAATG-ATTGATTGGTATAATTATGTGGTT 645
| |||||||||||||||||| |||||||||| || ||||||| || ||||||| |||||
Sbjct 673 TATCATTGAATGGGGTTATACATTACCTGGCT-TGGATTGATTCGTCTAATTATATGGTT 731
Query 646 GTGAGCTTCGACATCAGATCTGAAGAGTTCAAAATGATCCAAG 688
||||||||||||||| ||| |||||| |||||||||||| |||
Sbjct 732 GTGAGCTTCGACATCGGATATGAAGAATTCAAAATGATCGAAG 774
Score = 448 bits (242), Expect = 7e-125
Identities = 315/349 (90%), Gaps = 9/349 (3%)
Strand=Plus/Plus
Query 722 AAGCTATCGAGAAGGTGTGTCTTATAGAATATGGCGGAAAAGTAACTGTTTTTGACCATA 781
|||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 772 AAGCCATCAAGAAGGTGTGTCTTATAGAATATGGCGGAAAAGTAACTGTTTTTTACCATA 831
Query 782 CCTATCTTGAAGACAAGGGTACAGTGAATTTATGGGTCCTAGAAGATGTCAGAAACAA-G 840
|| |||||||||||||| ||||||||||||||||||| |||||||||||||| | ||| |
Sbjct 832 CCGATCTTGAAGACAAGAGTACAGTGAATTTATGGGTTCTAGAAGATGTCAGGA-CAAAG 890
Query 841 GAATGGTTGGGGAAGACTCTGGTTTTGCAGCCTTGTCAGCTGCATTTGGTCAAAAACGTT 900
|| ||||||| ||| |||||||||||||| ||||||| ||||||||||||||| ||||||
Sbjct 891 GAGTGGTTGGCGAAAACTCTGGTTTTGCAACCTTGTCCGCTGCATTTGGTCAAGAACGTT 950
Query 901 A-ATT---T-GGAGGTAAAAGGTATAACTCAAAGTGGCAAGGTTATAATGACACCACATT 955
| ||| | |||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 951 AGATTGGATTGGAGTTAAAAGGTATAACTCAAAGTGGCAAGGTTATAATGACACCAGATT 1010
Query 956 ATTTGTTTTATAAGTTTTACATTCTTTGTTATGATCTGCAAAGTAATGATATGAGAGTGA 1015
|||||||| ||| ||| ||||||||||||| ||||||||||||||||||||| |||| ||
Sbjct 1011 ATTTGTTTGATATGTTGTACATTCTTTGTTGTGATCTGCAAAGTAATGATATTAGAGAGA 1070
Query 1016 TTAAAATCAAAGGTATACCTTACCTATGGCGT-CCTAAGAAGGGTGAAT 1063
|||||||||||||||||| ||||| || || ||||||||||||||||
Sbjct 1071 TTAAAATCAAAGGTATACATTACC-ATTATGTTCCTAAGAAGGGTGAAT 1118
> AT3G52320.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:19403020-19404192 REVERSE LENGTH=1173
Length=1173
Score = 80.5 bits (43), Expect = 3e-14
Identities = 79/96 (82%), Gaps = 4/96 (4%)
Strand=Plus/Plus
Query 28 AGATTGCCTTCTAAAACCCTAATGAGATTCAAGTGCGTCTCAAAGCTCTGGTCAT-CTCT 86
|||||||| | ||| | || |||||||||||||||||||||||||||||| | | | ||
Sbjct 112 AGATTGCCGGCGAAATCTCTGATGAGATTCAAGTGCGTCTCAAAGCTCTGG-CTTTCCCT 170
Query 87 CATCCAC-TCTCCATACTTGACCAGCCGTTTCCTTA 121
||| || |||| |||||| |||| ||||||| |||
Sbjct 171 TATC-ACCTCTCGATACTTCACCAACCGTTTCTTTA 205
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54567992415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5