BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314295
Length=1272
Score E
Sequences producing significant alignments: (Bits) Value
AT1G48605.1 | Symbols: ATHAL3B, HAL3B, HAL3 | Flavoprotein | ch... 989 0.0
AT1G48610.1 | Symbols: | AT hook motif-containing protein | ch... 734 0.0
AT3G18030.1 | Symbols: ATHAL3A, HAL3A, HAL3, ATHAL3 | HAL3-like... 586 2e-166
> AT1G48605.1 | Symbols: ATHAL3B, HAL3B, HAL3 | Flavoprotein |
chr1:17969395-17970282 REVERSE LENGTH=644
Length=644
Score = 989 bits (535), Expect = 0.0
Identities = 612/648 (94%), Gaps = 9/648 (1%)
Strand=Plus/Plus
Query 630 GATCCTCCTTCCTCGGCTCT-TCAAGAT--AG-AGAAGATGAATATGCAAGTGGATACAG 685
|||||||||||||||||| | |||||| || |||||||||||||| ||||||||||||
Sbjct 1 GATCCTCCTTCCTCGGCTGTAACAAGATAGAGAAGAAGATGAATATGGAAGTGGATACAG 60
Query 686 TAACAAGGAGGAAGCCTCGTATCTTACTAGCTGCAAGTGGAAGTGTGGCTGCAATTAAGT 745
|||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 TAAC-A--AGGAAGCCTCGTATCTTACTAGCTGCAAGTGGAAGTGTGGCTTCAATTAAGT 117
Query 746 TCAGTAACCTCTGCCATTGTTTCTCAGAATGGGCTGAAGTCAAAGCCGTTGCTTCGAAAG 805
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 118 TCAGTAATCTCTGCCATTGTTTCTCAGAATGGGCTGAAGTCAAAGCCGTCGCTTCAAAAT 177
Query 806 CATCGCTGAATTTCGTTGATAAACCTTCTCTTCCACAAG-ATGTGACTCTCTATACAGAT 864
|||| || ||||||||||||||||||||||| || | || ||||||||||||||||||||
Sbjct 178 CATCTCTCAATTTCGTTGATAAACCTTCTCTACCTC-AGAATGTGACTCTCTATACAGAT 236
Query 865 GAAGATGAATGGTCTAGCTGGAACAAGATTGGTGATCCTGTGCTTCACATCGAGCTCAGA 924
|||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||
Sbjct 237 GAAGATGAATGGTCTAGCTGGAACAAGATTGGTGATCCCGTTCTTCATATCGAGCTCAGA 296
Query 925 CGCTGGGCTGATGTTATGATCATTGCTCCTTTGTCTGCTAACACATTAGCCAAGATTGCT 984
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CGCTGGGCTGATGTTATGATCATTGCTCCTTTGTCTGCTAACACATTAGCCAAGATTGCT 356
Query 985 GGTGGGTTATGTGATAATCTATTGACATGTATAGTAAGAGCGTGGGATTATAACAAACCG 1044
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 357 GGTGGGTTATGTGATAATCTATTGACATGTATAGTAAGAGCATGGGATTATAGCAAACCG 416
Query 1045 TTGTTCGTTGCACCGGCGATGAACACTTTGATGTGGAACAATCCTTTCACAGAACGGCAC 1104
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 TTGTTTGTTGCACCGGCGATGAACACTTTGATGTGGAACAATCCTTTCACAGAACGGCAC 476
Query 1105 CTTGTGTTGCTTGATGAACTGGGAATCACTCTCATTCCTCCCATCAAGAAGAAACTGGCC 1164
||||| |||||||||||||| |||||||| || |||||||||||||||||||||||||||
Sbjct 477 CTTGTCTTGCTTGATGAACTTGGAATCACCCTAATTCCTCCCATCAAGAAGAAACTGGCC 536
Query 1165 TGTGGAGATTACGGTAACGGCGCAATGGCTGAGCCTTCTCTGATCTATTCCACTGTTAGA 1224
|||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 537 TGTGGAGACTACGGTAATGGCGCAATGGCTGAGCCTTCTCTGATTTATTCCACTGTTAGA 596
Query 1225 CTGTTCTGGGAGTCACAGGCTCGTAAACAAAGTGATGGAACCAGTTGA 1272
||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 597 CTGTTCTGGGAGTCACAAGCTCGTAAACAAAGAGATGGAACCAGTTGA 644
> AT1G48610.1 | Symbols: | AT hook motif-containing protein |
chr1:17970678-17973303 REVERSE LENGTH=1216
Length=1216
Score = 734 bits (397), Expect = 0.0
Identities = 566/642 (88%), Gaps = 33/642 (5%)
Strand=Plus/Plus
Query 1 ATGGCGAAAACAGCTTC-TACACATCCCGGGTCTGGTTCCGAAGCTCCAAGATCCGGTAC 59
|||||||||||||| || ||| | ||||| |||||||||||||| |||||||||||||||
Sbjct 229 ATGGCGAAAACAGC-TCTTACTCCTCCCGCGTCTGGTTCCGAAGTTCCAAGATCCGGTAC 287
Query 60 ACCTGGAGATGCGTCTGGCAACAAACCTCAAACGGATCCCACCGGCGTCTCAGCTACTGT 119
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 288 ACCTGGAGATGCGTCTGGCAACAAACCTCAAACGGATGCCACCGGCGTCTCAGCTACTGA 347
Query 120 TACTGCTTCTCAGAAACGCGGCCGTGGTCGACCGCCAAAGGCTAAATCTGACTCTACACA 179
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||
Sbjct 348 TACTGCTTCTCAGAAACGCGGTCGTGGTCGACCGCCAAAGGCTAAATCTGACTCTTCCCA 407
Query 180 AAACGGCGCCGTTTCTGCTAAGGCGAGTACAAAACCGAGTGGTCGTCCGAAAAGAAAGGT 239
|| ||| ||||||||||| ||||||||||| ||||| |||||||||||||||||||| ||
Sbjct 408 AATCGGTGCCGTTTCTGCGAAGGCGAGTACTAAACCAAGTGGTCGTCCGAAAAGAAACGT 467
Query 240 AGCTCCGGCTGTTCCTACTACTTCTGTGGCGGCTGCTGTGAAGAGCCGTGGTAGGGCAAA 299
||||| |||||||||| |||| ||||||||||| |||||||||| ||||||||||||||
Sbjct 468 AGCTCAGGCTGTTCCTTCTACGTCTGTGGCGGCGGCTGTGAAGAAACGTGGTAGGGCAAA 527
Query 300 GAGGTCGACTGTAACGGCGTCTGTGGTTACTACTGCTACTGGAGAGGGTTCAAGAAAACG 359
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 528 GAGGTCGACTGTAACGGCGGCTGTGGTTACTACTGCTACTGGAGAGGGTTCTAGAAAACG 587
Query 360 AGGGAGGCCAAAGAAAGATGACGTGGCGGCTCCAGCT-----A--ATAAAC-GTGGACGG 411
||||||||||||||||||||||||||||||| || || | | |||| |||| ||
Sbjct 588 AGGGAGGCCAAAGAAAGATGACGTGGCGGCTGCAACTGTTCCAGCAGAAACTGTGGT-GG 646
Query 412 AAAC--CTAAT-GTCG---AAGCAGT--TGCTG-C-AA--AGC--C-C-G--TGCGCAGC 453
| |||| | || ||| | | ||| | || ||| | | | || || ||
Sbjct 647 CTCCAGCTAAGAGACGTGGAAGGAAACCTACTGTCGAAGTAGCTGCACAGCCTGTGC-GC 705
Query 454 AGTACTAGGAAGAGCACTTCAGTGGCAGCACCGGTAGCTGCAAACCTCGGAGATCTCAAG 513
|| |||||||||||||||||||||||| | | ||||||||||||| ||||||||||||||
Sbjct 706 AGGACTAGGAAGAGCACTTCAGTGGCA-C-C-GGTAGCTGCAAACGTCGGAGATCTCAAG 762
Query 514 aaaaaaaCCGCACTCTTACAAAAGAAAGTGAAGGAAGCTGCAGCTAAGTTGAAACAAGCA 573
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 763 AAAAGAACCGCACTCTTACAAAAGAAAGTGAAGGAAGCTGCAGCTAAGTTGAAACAAGCA 822
Query 574 GTTACAGCAATTGACGAGGTCCAAAAGCTAGCGGATGGAATG 615
|| |||||||||||||||||||| ||| ||||||||||||||
Sbjct 823 GTAACAGCAATTGACGAGGTCCAGAAGTTAGCGGATGGAATG 864
> AT3G18030.1 | Symbols: ATHAL3A, HAL3A, HAL3, ATHAL3 | HAL3-like
protein A | chr3:6167640-6168948 REVERSE LENGTH=1192
Length=1192
Score = 586 bits (317), Expect = 2e-166
Identities = 500/587 (85%), Gaps = 18/587 (3%)
Strand=Plus/Plus
Query 693 GAGGAAGCCTCGTAT-CTTACTAGCTGCAAGTGGAAGTGTGGCTGCAATTAAGTTCAGTA 751
||||||||||||| | | |||| |||||||||||||| || ||||| || || ||| | |
Sbjct 370 GAGGAAGCCTCGTGTAC-TACTCGCTGCAAGTGGAAGCGTCGCTGCTATCAAATTCGGCA 428
Query 752 ACCTCTGCCATTGTTTCTCAGAATGGGCTGAAGTCAAAGCCGTTGCTT-CGAAAGCATCG 810
| ||||||||||| ||| | |||||||| ||||||| |||||| | || ||||| ||||
Sbjct 429 ATCTCTGCCATTGCTTCACCGAATGGGCAGAAGTCAGAGCCGTCG-TTACGAAATCATCT 487
Query 811 CTGA-ATTTCGTTGATAAACCT-TCTCTTCCACAAGATGTGACTCTCTATACAGATGAAG 868
|| | ||||| | |||||| || ||||| |||||||| |||||||| ||||| |||||||
Sbjct 488 CT-ACATTTCCTCGATAAA-CTCTCTCTCCCACAAGAAGTGACTCTGTATACTGATGAAG 545
Query 869 ATGAATGGTCTAGCTGGAACAAGATTGGTGATCCTGTGCTTCACATCGAGCTCAGACGCT 928
||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| |
Sbjct 546 ATGAATGGTCTAGCTGGAACAAGATCGGTGATCCTGTCCTTCACATCGAGCTTAGACGTT 605
Query 929 GGGCTGATGTTAT-GATCATTGCTCCTTTGTCTGCTAACACATTAGCCAAGATTGCTGGT 987
||||||||||| | | ||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 606 GGGCTGATGTTTTAG-TCATTGCTCCTTTGTCTGCTAACACCTTAGGCAAGATTGCTGGT 664
Query 988 GGG-TTATGTGATAATCTAT-TGACATGTAT-AGTAAGAGCGTGGGATTATAACAAACCG 1044
||| || ||||||||||| | |||| || || | || |||| ||||| |||| ||||||
Sbjct 665 GGGCTT-TGTGATAATCT-TCTGACTTGCATTA-TACGAGCTTGGGACTATACCAAACCA 721
Query 1045 TTGTTCGTTGCACCGGCGATGAACACTTTGATGTGGAACAATCCTTTCACAGAACGGCAC 1104
|||| ||||| || || ||||| |||||||||||||||||||||||||| ||| ||||
Sbjct 722 CTGTTTGTTGCTCCAGCTATGAATACTTTGATGTGGAACAATCCTTTCACTGAAAGGCAT 781
Query 1105 CTTGTGT-TGCTTGATGAACTGGGAATCACTCTCATTCCTCCCATCAAGAAGAAACTGGC 1163
||| ||| | |||||||||||||||||||| || |||||||| |||||||||| ||| ||
Sbjct 782 CTTTTGTCT-CTTGATGAACTGGGAATCACACTTATTCCTCCTATCAAGAAGAGACTTGC 840
Query 1164 CTGTGGAGATTACGGTAACGGCGCAATGGCTGAGCCTTCTCTGATCTATTCCACTGTTAG 1223
||||||||| |||||||| || || ||||||||||| ||||| |||||||||||||| ||
Sbjct 841 CTGTGGAGACTACGGTAATGGAGCTATGGCTGAGCCCTCTCTTATCTATTCCACTGTCAG 900
Query 1224 ACTGTTCTGGGAGTCACAGGCTCGTAAACAAAGTGATGGAACCAGTT 1270
||| ||||||||||| ||||||| | | |||| | |||||| ||||
Sbjct 901 ACTCTTCTGGGAGTCTCAGGCTCATCAGCAAACCGGTGGAACTAGTT 947
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62549879070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5