BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314320
Length=1149
Score E
Sequences producing significant alignments: (Bits) Value
AT1G48910.1 | Symbols: YUC10 | Flavin-containing monooxygenase ... 1783 0.0
AT1G48912.1 | Symbols: | unknown protein; Has 30201 Blast hits... 206 5e-52
> AT1G48910.1 | Symbols: YUC10 | Flavin-containing monooxygenase
family protein | chr1:18091681-18093774 FORWARD LENGTH=1152
Length=1152
Score = 1783 bits (965), Expect = 0.0
Identities = 1085/1145 (95%), Gaps = 0/1145 (0%)
Strand=Plus/Plus
Query 1 ATGGAGACAGTAGTGGTGATTGTGGGAGCTGGACCGGCCGGTTTAGCAACATCCGTTTGT 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGGAGACCGTAGTGGTGATTGTGGGAGCTGGACCGGCCGGTTTAGCAACATCGGTTTGT 60
Query 61 CTAAACCAACACTCAATCCCAAACGTGATTCTCGAGAAAGAAGACATCTATGCATCACTT 120
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 61 CTAAACCAACACTCAATCCCAAACGTGATCCTCGAGAAAGAAGACATCTATGCATCCCTT 120
Query 121 TGGAAGAAACGAGCCTACGATCGTCTCAAACTTCACTTAGCCAAAGAATTTTGCCAGCTA 180
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGGAAGAAACGAGCGTACGATCGTCTCAAACTTCACTTAGCCAAAGAATTTTGCCAGCTT 180
Query 181 CCTTTCATGCCACACGGTCGTGATGTTCCAACCTTTATGCCCAAAGAGCTTTTCGTCAAC 240
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 181 CCTTTCATGCCACACGGTCGTGAGGTTCCAACCTTTATGTCCAAAGAGCTTTTCGTCAAC 240
Query 241 TACCTTGACGCTTACGTTTCCCGTTTCGACATCAACCCTAGGTACAACCGTACCGTGAAG 300
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TACCTTGACGCTTACGTTGCCCGTTTCGACATCAACCCTAGGTACAACCGTACCGTGAAG 300
Query 301 TCCTCAACGTTCGATGAGTCCAATAACAAGTGGAGGGTCGAGGCGGAAAACACGGTGACC 360
|||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||
Sbjct 301 TCCTCAACGTTCGATGAGTCCAATAACAAGTGGAGGGTCGTGGCCGAAAACACGGTAACC 360
Query 361 GGAGAAACCGAGGTCTATTTGTCGGAGTTTCTGGTGGTTGCGACTGGGGAGAATGGAGAT 420
|||||||||||||| |||| |||||||||||||||||||||||| |||||||| ||||||
Sbjct 361 GGAGAAACCGAGGTGTATTGGTCGGAGTTTCTGGTGGTTGCGACCGGGGAGAACGGAGAT 420
Query 421 GGGAATATTCCGATGGTGAAAGGGATTGAAACTTTCCCCGGAGAGATTTTGCACTCGAGT 480
|||||||||||||||||| | |||||||| ||||| ||||||||| |||||||||||
Sbjct 421 GGGAATATTCCGATGGTGGAGGGGATTGACACTTTTGGGGGAGAGATTATGCACTCGAGT 480
Query 481 GGGTACAAGTCCGGTCGTGATTTTAAAGATAAAAATGTTCTTGTGGTCGGAGGTGGAAAT 540
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GAGTACAAGTCCGGTCGTGATTTTAAAGATAAAAATGTTCTTGTGGTCGGAGGTGGAAAT 540
Query 541 TCCGGTATGGAGATTTGTTTTGACCTTTGCAACTTCGGAGCTAATACGACCGTTCTCATT 600
||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||| |||
Sbjct 541 TCCGGTATGGAGATTAGTTTTGATCTTTGCAACTTCGGAGCTAATACGACCATTCTAATT 600
Query 601 AGAACTCCAAGACACGTGGTGACTAAAGAAGTGATACACTTGGGGATGTCACTTCTGAAG 660
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 601 AGAACTCCAAGACACGTGGTGACTAAAGAAGTGATACACTTGGGGATGACACTTCTGAAG 660
Query 661 TATGTTCCAGTGACGATGGTGGACACATTGGTGACGACTATGGCGAAAATTTTGTACGGA 720
|||| ||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 661 TATGCTCCAGTGGCGATGGTCGACACATTGGTGACGACTATGGCAAAAATTTTGTACGGA 720
Query 721 GATCTCTCCAAGTACGGACTTTTCCGACCAAAACAAGGTCCTTTTGCCACCAAACTCTCC 780
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 721 GATCTCTCCAAGTACGGACTCTTCCGACCAAAACAAGGTCCTTTCGCCACCAAACTCTTT 780
Query 781 ACCGGAAAAGCTCCTGTCATTGATGTTGGAACTGTCCAAAAGATTCGCGGTGGCGAGATT 840
|||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||
Sbjct 781 ACCGGAAAAGCTCCTGTCATTGATGTTGGAACTGTCGAGAAGATTCGCGATGGCGAGATT 840
Query 841 CAGGTCATCAATGGTGGGATTGGAAGCATCAACGGCAAGACCTTGACGTTCGAAAATGGA 900
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 841 CAGGTTATCAATGGTGGGATTGGAAGCATCAACGGGAAGACCTTGACGTTCGAAAACGGA 900
Query 901 CTTGAACAAGACTTCGATGCGATTGTGTTTGCAACTGGTTACAAAAGCTCTGTTTGCAAT 960
| | ||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 901 CATAAACAAGATTTCGATGCGATTGTGTTTGCTACTGGTTACAAAAGCTCCGTTTGCAAT 960
Query 961 TGGTTAGAGGACTATGAATACGTGATGAAGAAGGATGGATTTCCCAAAACACCGATGCCA 1020
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 961 TGGTTAGAGGACTATGAATACGTGATGAAGAAGGATGGATTCCCCAAAGCACCGATGCCA 1020
Query 1021 AAGCATTGGAAAGGAGAGAAGAATCTTTACTGTGCCGGATTTTCAAGAAAGGGAATCGCC 1080
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1021 AAACATTGGAAAGGAGAGAAGAATCTTTACTGTGCCGGATTTTCAAGAAAAGGAATCGCC 1080
Query 1081 GGAGCCGCGGAGGATGCTATGTCCGTCGCTGACGACATCAGATCTATCTTGGCTACCATa 1140
|||| || |||||||||||||| || || ||||||||||||||||||||||||||| ||
Sbjct 1081 GGAGGTGCTGAGGATGCTATGTCTGTAGCCGACGACATCAGATCTATCTTGGCTACCTTA 1140
Query 1141 aaaaa 1145
|||||
Sbjct 1141 AAAAA 1145
> AT1G48912.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:18094900-18095046
FORWARD LENGTH=147
Length=147
Score = 206 bits (111), Expect = 5e-52
Identities = 135/147 (92%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 995 ATGGATTTCCCAAAACACCGATGCCAAAGCATTGGAAAGGAGAGAAGAATCTTTACTGTG 1054
||||||| |||||| ||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1 ATGGATTCCCCAAAGCACCGATGCCAGATCATTGGAAAGGAGAGAAGAATCTTTACTGTG 60
Query 1055 CCGGATTTTCAAGAAAGGGAATCGCCGGAGCCGCGGAGGATGCTATGTCCGTCGCTGACG 1114
||||||||| |||||| ||||||| ||||| || ||||||||||||||| |||| ||||
Sbjct 61 CCGGATTTTAAAGAAAAGGAATCGTCGGAGGTGCCGAGGATGCTATGTCCATCGCCGACG 120
Query 1115 ACATCAGATCTATCTTGGCTACCATaa 1141
|||||||||||||||||||||||||||
Sbjct 121 ACATCAGATCTATCTTGGCTACCATAA 147
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56375212035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5