BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314327
Length=1008
Score E
Sequences producing significant alignments: (Bits) Value
AT1G48980.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 1491 0.0
> AT1G48980.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr1:18118017-18120647
FORWARD LENGTH=1830
Length=1830
Score = 1491 bits (807), Expect = 0.0
Identities = 933/994 (94%), Gaps = 7/994 (1%)
Strand=Plus/Plus
Query 1 ATGGACAACAATTCTTTTATCAGGCAGTCGGAACTCAAGATCGGTTCAGAAGTCTACCTT 60
||||||||| ||||||||||| |||||||||||||| |||||| |||| ||||| |||||
Sbjct 699 ATGGACAACTATTCTTTTATCCGGCAGTCGGAACTCGAGATCGCTTCAAAAGTCAACCTT 758
Query 61 CTCTCCAAACGAATCC-CTTCTCAAGAACAAGAAGTTACACTAGATGTTTCTCATATGAT 119
|||||||||||||||| | |||||||||||||||||| | ||||| |||||| || ||
Sbjct 759 CTCTCCAAACGAATCCGC-TCTCAAGAACAAGAAGTTGCTGTAGATTTTTCTC--AT-AT 814
Query 120 GACATTGGAGGATGAGCTCAGTGAGGAAGAGGATCAGAAATATTCAAGTAGAGAGGCTTT 179
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 815 GACATTGGAGGATGAGCTCAGTGAGGAAGAGGATCATAAAGATTCAAGTAGAGAGGCTTT 874
Query 180 TGATGCGAGTCTTGAGAATCATAAACTTTCTAGGGAGCAAAGAGA-GCATATTCGGGCGA 238
|| | |||||||||||||||||||||| || ||| |||||||| | ||||||||||||||
Sbjct 875 TGGTTCGAGTCTTGAGAATCATAAACTGTCGAGGAAGCAAAGA-ACGCATATTCGGGCGA 933
Query 239 TAAATGTGAAGAGAAAGAGAGACTTTGTTTACTTGGAGAAAGTTAACGGAGAGATTGTTA 298
|||| ||||||||||| ||||||||||||| ||||||||||||||| |||||| ||||||
Sbjct 934 TAAACGTGAAGAGAAAAAGAGACTTTGTTTGCTTGGAGAAAGTTAATGGAGAGCTTGTTA 993
Query 299 ACATACTAGATGGACTCGAATTGCATACCGAAGTTTTTAATGCAGCGGAACAGAAAATGA 358
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 994 ACATACTAGAGGGACTCGAATTGCATACCGAAGTTTTTAATGCAGCGGAACAGAGAAGGA 1053
Query 359 TAGTTGATAAAGTGTGTGAATTGCAAGAGAAGGGACAAAAAGGAGAACTAAAGCGTGCTT 418
|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 1054 TAGTTGATAAAGTGTGTGAATTGCAAGAAAAGGTTCAAAAAGGAGAACTAAAGCGTGCTT 1113
Query 419 TTACTGCTCGAGGCAAAGGACGTTCAACAATTCAATTCGGCTGTTGTTTCAACTACCGTA 478
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1114 TTACTGCTCAAGGCAAAGGACGTTCAACTATTCAATTCGGCTGTTGTTTCAACTACCGTA 1173
Query 479 CAAGCAAAGCTGGAAACCCGGCGGGGATTCTTAAACATGAAACTGTTGATCCATTGCCTC 538
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1174 CAAGCAAAACTGGAAACCTGGCGGGGATTCTTAAACATGAAACTGTTGATCCATTGCCTC 1233
Query 539 ATCTTTTCAAGGTGATCATTAGAAGGTTGGTTAAATGGCATGTTCTACCTCCAACTTGTG 598
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1234 ATCTTTTCAAGGTGATCATAAGAAGGTTGGTTAAATGGCATGTTCTGCCTCCAACTTGTG 1293
Query 599 TTCCTGATTGTTGTGTAGTCAACATTTATGATGAAGGTGATTGCATACCTCCTCATATAG 658
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1294 TTCCTGATTGTTGTGTAGTCAATATTTATGATGAAGGTGATTGCATACCTCCTCATATCG 1353
Query 659 ACAATCACGCCTTCCTCCGCCCGTTCTGTACCGTTTCTTTCCTTAGTGAATGCAATATTC 718
|| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1354 ACCATCACGACTTCCTCCGCCCGTTCTGTACTGTTTCTTTCCTTAGTGAATGCAATATTC 1413
Query 719 TCTTCGGATCAAACCTTAAAGTTAAAGAAACCGGTGAATATACGGGTGGTTCATACTCGT 778
||||||||||||||||||||||| | ||||||||||||||| ||||||||||||| || |
Sbjct 1414 TCTTCGGATCAAACCTTAAAGTTGAGGAAACCGGTGAATATTCGGGTGGTTCATATTCAT 1473
Query 779 TACCGCTTCCTGTTGGATCAGTGCTTGTGTTAAACGGGAACGGAGCTGATGTAGCTAAGC 838
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1474 TACCGCTTCCTGTTGGATCAGTGCTTGTGTTAAACGGGAATGGAGCTGATGTAGCTAAGC 1533
Query 839 ATTGTGTACCTGAAGTTCCCACGAAAAGAATATCAATCACATTTAGAAAAATGGATGAGT 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1534 ATTGTGTACCTGAAGTTCCCACGAAAAGAATATCAATCACATTTAGAAAAATGGATGAGT 1593
Query 899 CAAAATGGCCAGTCTGGTTCACACCAGAGCCTTATTTGCAAGGGATACAGCCATTGCCGT 958
|||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||| | |
Sbjct 1594 CAAAATGGCCAGTCTGGTACACACCAGAACCTTATTTGCAAGGGATTCAGCCATTGACAT 1653
Query 959 ACGAGCTGAAATCTCCTGGTTCCTCTGATCATGT 992
|||||||||||||| ||| |||||||| |||||
Sbjct 1654 ACGAGCTGAAATCTTGTGGCTCCTCTGACCATGT 1687
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49380166501
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5