BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314341
Length=801
Score E
Sequences producing significant alignments: (Bits) Value
AT1G49180.1 | Symbols: | protein kinase family protein | chr1:... 1182 0.0
> AT1G49180.1 | Symbols: | protein kinase family protein | chr1:18184654-18187529
REVERSE LENGTH=1498
Length=1498
Score = 1182 bits (640), Expect = 0.0
Identities = 713/749 (95%), Gaps = 2/749 (0%)
Strand=Plus/Plus
Query 1 ATGATGCTGGGGGAGTACACAGCGAAATCGAAGCTCAGTGAGAGTTCAACATCTACGGTT 60
|||||||| | || |||| |||||||||||||||||||||||||| ||| |||||||||
Sbjct 89 ATGATGCTTGATGATTACATAGCGAAATCGAAGCTCAGTGAGAGTTTAACCTCTACGGTT 148
Query 61 TGGCTAGCGAAGCACAAGTTAACCGGAGAAGAAGCAGTGATGAAGTGTTTCAATCTCTCG 120
||| |||||||||||||||||||||| |||||||||||||||||||||||| | ||||||
Sbjct 149 TGGTTAGCGAAGCACAAGTTAACCGGCGAAGAAGCAGTGATGAAGTGTTTCGACCTCTCG 208
Query 121 AAACTCAATCGCAATCTCCGA-ACCTGTTTAAACAACGAACTCGAGTTTCTATCTTCCGT 179
|| |||||||||||||||||| | |||||||||||||||||| |||||||||||||| ||
Sbjct 209 AAGCTCAATCGCAATCTCCGAGA-CTGTTTAAACAACGAACTGGAGTTTCTATCTTCTGT 267
Query 180 TGATCATCCCAATATCATTCGTCTCCTCCATGTTTTTCAAGATGAGGATTTTCTCGTTAT 239
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 268 TGATCATCCCAATATCATTCGTCTCCTCCATGTTTCTCAAGATGATGATTTTCTCGTTAT 327
Query 240 GGTTATGGAATATTGTGATGGAGGAACTTTATCATCGTATATTCAACGTTATGGGAGAGT 299
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 328 GGTTTTGGAATATTGTGATGGAGGAACTTTATCATCGTATATTCAACGTTATGGTAGAGT 387
Query 300 TGAAGAAGATATTGCCAAGAGATTTTTGAAGCAAATTGGAGCTGGTTTGGAAATTATTCA 359
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 388 TGAAGAAGATATCGCCAAGAGATTTATGAAGCAAATTGGAGCTGGTTTGGAAATTATTCA 447
Query 360 TGATAATCACATCATCCATAGAGACTTGAAACCTGAGAATATTTTACTTGTTGGATCTGG 419
|||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 448 TGATAATCACATTATCCATAGAGACTTGAAACCTGAGAATATTTTAATTGACGGATCTGG 507
Query 420 TGATGATTTGGTGTTGAAGATTGCTGATTTTAGTCTTGCAAGAAAACTACTTCCGGGAAA 479
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||
Sbjct 508 TGATGATTTGGTGTTGAAGATTGCCGATTTTAGTCTTGCAAGAAAACTACATCCGGGCAA 567
Query 480 GTATCTTGAGACGGTGTGTGGTTCTCCGTTTTACATGGCTCCTGAAGTTCTTCAGTTTCA 539
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 568 GTATCTTGAAACAGTGTGTGGTTCTCCGTTTTACATGGCTCCTGAAGTTCTTCAGTTTCA 627
Query 540 GAGATACAATGAAAAGGCTGATATGTGGAGTGTAGGAGCAATCCTTTTCGAGCTACTTCA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 628 GAGATACAATGAAAAGGCTGATATGTGGAGTGTAGGAGCAATCCTTTTCGAGCTACTTCA 687
Query 600 CGGGTATCCACCATTCCGCGGTAATAACAATGTTCAGGTTCTAAGGAACATCAAATCTAG 659
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 688 CGGGTATCCACCATTCCGTGGTAATAACAATGTTCAGGTTCTAAGGAACATCAAATCTAG 747
Query 660 TACATCTCTTCCCTTCTCTCGGCTGATTCTTCAACAGATGCATCCTGATTGCATCGACGT 719
|||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 748 TACAGCTCTTCCATTCTCTCGGCTTATTCTTCAACAGATGCATCCTGATTGCATCGACGT 807
Query 720 CTGTTCAAGATTGCTTTCTATTAACCCAG 748
||| |||||||||||||||||||||||||
Sbjct 808 CTGCTCAAGATTGCTTTCTATTAACCCAG 836
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38981698072
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5