BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg314350

Length=246
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G49310.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   412    6e-115


> AT1G49310.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant 
structures; EXPRESSED DURING: LP.04 four leaves visible, petal 
differentiation and expansion stage; Has 11 Blast hits to 
11 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr1:18237863-18238367 REVERSE LENGTH=425
Length=425

 Score =  412 bits (223),  Expect = 6e-115
 Identities = 242/250 (97%), Gaps = 5/250 (2%)
 Strand=Plus/Plus

Query  1    ATGAAGC-A-A-CAACGTTACTTGGTCGTCTTCATCGTCCTTTTCAGCTTTCTTCTGTTT  57
            ||||||| | | |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  43   ATGAAGCAACAGCAACGTTACTTGGTCGTCTTCATCGTCCTTTTAAGCTTTCTTCTGTTT  102

Query  58   GTGAATCTGAGTGAAGGAAGAACAGGAGGAGTTGCAGAAGAATATTGGAAGAAGATGATG  117
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  103  GTGAATCTGAGTGAAGGAAGAACAGGAGGAGTTGCAGAAGAATATTGGAAGAAGATGATG  162

Query  118  AAGAATGAACCGTTGCCTGAACCAATCAAAGAGCTTCTCAACAATCCGTTTAGGACCGGC  177
            ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct  163  AAGAATGAACCGTTGCCTGAACCAATCAAAGAGCTTCTCAACAATCCTTTTAGGACCG-C  221

Query  178  -CAAGAGAGATTCATCCAGAATTTCGACACCAAATCTGTTGTCCTCATCTACCACAATCC  236
             |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  222  ACAAGAGAGATTCATCCAGAATTTCGACACCAAATCTGTTGTCATCATCTACCACAATCC  281

Query  237  TAATGAATAA  246
            ||||||||||
Sbjct  282  TAATGAATAA  291



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11159440278


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5