BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314357
Length=2358
Score E
Sequences producing significant alignments: (Bits) Value
AT3G46220.2 | Symbols: | unknown protein; INVOLVED IN: biologi... 1434 0.0
> AT3G46220.2 | Symbols: | unknown protein; INVOLVED IN: biological_process
unknown; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF2042 (InterPro:IPR018611).
| chr3:16979048-16984082 FORWARD LENGTH=2677
Length=2677
Score = 1434 bits (776), Expect = 0.0
Identities = 1113/1267 (88%), Gaps = 58/1267 (5%)
Strand=Plus/Plus
Query 598 AATTCGTTTTTCCACTCTATATTTGATCGACTGTTGAAGGAAGAGGAGATGCTTGGATCA 657
||||| |||||||| ||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 790 AATTCATTTTTCCAGTCTATATTTAACCGACTGTTGAAGGAAGAGGAGATGCTTGGATCA 849
Query 658 TTACGTGCTGGTACACATTGGACTCCTAGTGTTTTTGCAGTTGCTCAAAAGGAATGCGTA 717
|||||||||| || |||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 850 CTACGTGCTGGAACCCATTGGACTCCTAGTGCTTTTGCAACTGCTCAAAAGGAATGCGTA 909
Query 718 GACTCTTTC-TTCTCACAGAATTCTTATATTC-CCTATGAGACCATGCAGAAGCTTGGAA 775
||||| ||| || ||||||||||| || | || ||||||||| ||||||||||||||| |
Sbjct 910 GACTC-TTCTTTTTCACAGAATTCCTACA-TCTCCTATGAGAGCATGCAGAAGCTTGGGA 967
Query 776 TTTCTCTCAAGCCGTTCAGTTCTT--A--C-AGATACCCAGATGGTAAACCTTTAGCTGC 830
|| |||||||| || |||||||| | | |||||||||||||| | ||||||||||||
Sbjct 968 -TT-TCTCAAGCTGTGCAGTTCTTACAGTCTAGATACCCAGATGGCACACCTTTAGCTGC 1025
Query 831 TGTATTTATTCATTCCTCGATGATTGAGATGCTGGATTCTACCACCGAGGATGCTATTGA 890
|||||||||||||||||| ||||||||||||||||||||| | || ||||||||||||||
Sbjct 1026 TGTATTTATTCATTCCTCAATGATTGAGATGCTGGATTCTGCAACTGAGGATGCTATTGA 1085
Query 891 ACAAAACAGCTGGATCGATTCCCTCTCTGTATTACCTTCATCATTCACGTCACAGGATGC 950
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1086 ACAAAACAGTTGGATCGATTCCCTCTCTGTATTACCTTCATCGTTCACGTCACAGGATGC 1145
Query 951 AAACAAGATGTTGCTTCTTTGTCCCTCCGTCCAATCAGCTCTCAAGGCTGAGAAAGCACT 1010
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1146 AAACAAGATGTTGCTTCTTTGTCCCTCTGTCCAATCAGCTCTCAAGGCTGAGAAAGCACT 1205
Query 1011 TATCCTGGGCGAGTCCTATGTCCTAAGCAATGGGTTCATAAAGGGAATATATGATCAAAT 1070
|||| ||||||| |||||||||||||||| ||| || || ||||||||||||||||||||
Sbjct 1206 TATCTTGGGCGAATCCTATGTCCTAAGCAGTGGCTTTATCAAGGGAATATATGATCAAAT 1265
Query 1071 TGAGAAAGAGGCAGAAGCTTTTAGCATCCAAGCTTCTAATGCTAGTTTGATAGATCATTC 1130
||||||||||||||| |||||||||||||||||||||| ||||| ||||||| ||| |||
Sbjct 1266 TGAGAAAGAGGCAGATGCTTTTAGCATCCAAGCTTCTACTGCTACTTTGATACATCCTTC 1325
Query 1131 AAGCAAATCTTCAGAATCGGTAGAAAGCATACCTGCCAGTACTAATACGGATAAAGGATC 1190
|||||| || ||||| ||| ||||||||||||||||| ||| | | ||||||| ||
Sbjct 1326 AAGCAAGTCGTCAGAGTCGACAGAAAGCATACCTGCCAATAC-A----G-ATAAAGGGTC 1379
Query 1191 AAAGAAGAAGAAAGGCAAGTCTGTCA-GCATGAAGACAGCAACCAATGAGACGGTTTCAG 1249
||||||||| ||||| ||||||| || ||| |||| |||| ||| ||| || ||| |||
Sbjct 1380 AAAGAAGAAAAAAGGAAAGTCTG-CAAGCACGAAGGCAGCTACCGTTGAAACTGTTCCAG 1438
Query 1250 ATGATGAAGAGGACGCCCGTCCTAAATCTAAGAGAAACCAGAAGAAAGGCAGGGG--C-T 1306
||||||||||||| |||||||| |||||||||||||||||||||||||| |||| | |
Sbjct 1439 ATGATGAAGAGGATGCCCGTCCAAAATCTAAGAGAAACCAGAAGAAAGGAAGGGATTCAT 1498
Query 1307 CGTC-T-A-AG---TTGGATTCGAAAGCAGGAGGCAAGAAAGAGTCCGTTAAGGCGCAAG 1360
| || | | || |||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1499 CTTCATCACAGAAGTTGGATTCAAAAGCAGGAGGCAAGAAAGAGTCAGTTAAGGCGCAAG 1558
Query 1361 AAGGTAATAACTTTATCCCGCCAGACGAGTGGGTGATGAAAAAGATCGTCGACTTTGTGC 1420
|| |||||||| |||| ||||||||||| ||||||||||||||||||||||||| ||| |
Sbjct 1559 AAAGTAATAACATTATTCCGCCAGACGAATGGGTGATGAAAAAGATCGTCGACTCTGTAC 1618
Query 1421 CTGAGTTTGAAGATGA----A-----G-G---T-------ATG---G-AGAACCCAGATT 1456
|||| ||||||||||| | | | | ||| | ||||||||||||
Sbjct 1619 CTGAATTTGAAGATGATGGTACATCTGAGAACTTTTTCCTATGTACGGAGAACCCAGATT 1678
Query 1457 CAATTCTTAAGCATTTGGCTGATCTTATGAGACCGATGCTCATTAATTCACTGAAGGAGA 1516
| |||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1679 CGATTCTTAAGCATTTAGCTGATCATATGAAACCGATGCTCATTAATTCACTGAAGGAGA 1738
Query 1517 GAAGAAAGAAAATCTTCACAGAAAATGCAGATAGAATGAAACGCTTGATGGAAAATCTTC 1576
||||||||||||||||||||||||||||||||||||||| |||||||| || |||| |
Sbjct 1739 GAAGAAAGAAAATCTTCACAGAAAATGCAGATAGAATGAGGCGCTTGATTGATGATCTGC 1798
Query 1577 AGAAAAAGCTTGATGAGTCTTTCCTAAATATGCAACTTTACGAAAAAGCACTTGAGCTAT 1636
|||||||||||||||||||||||||||||||||| || ||||||||||| || || || |
Sbjct 1799 AGAAAAAGCTTGATGAGTCTTTCCTAAATATGCAGCTGTACGAAAAAGCGCTAGACCT-T 1857
Query 1637 TT-GAAGATGACCAATCGACCT-CAGTTGTTTTACATAGGCATCTTCTGAGAACAACAAC 1694
|| |||||||||||||| || | |||||||||||||||||||||| |||||||||||| |
Sbjct 1858 TTCGAAGATGACCAATCAAC-TGCAGTTGTTTTACATAGGCATCTGCTGAGAACAACAGC 1916
Query 1695 AGCCACAATTGCTGATACACTTCTTCATGACTTGGACATCCTCAACAAATTGAAGAATGG 1754
||| ||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||
Sbjct 1917 AGCTACAATTGCTGATACACTTCTTCATGGCTTGGACATCCACAACAAAATGAAGAATGG 1976
Query 1755 TACTGAAGTTGGAGACTCCAAAACTCAAGATAC-AGTTTTGCTTGACTCTTCTGAAAGAA 1813
||||||||||| ||| |||||||| |||||| | ||| |||||||| |||||||| ||||
Sbjct 1977 TACTGAAGTTGAAGAATCCAAAACGCAAGAT-CTAGTGTTGCTTGATTCTTCTGAGAGAA 2035
Query 1814 CAGCCCT 1820
|||||||
Sbjct 2036 CAGCCCT 2042
Score = 448 bits (242), Expect = 2e-124
Identities = 312/346 (90%), Gaps = 4/346 (1%)
Strand=Plus/Plus
Query 2013 GGATTTGACATCTCAAGTTTCTACCGAATCAGACCCTGTTGCACTTCTCGCTAAAGTTGT 2072
|||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 2220 GGATTTGATATCTCAAGTTTCCACCGAATCAGACCCTATTGCACTTCTCGCTAAAGTTGT 2279
Query 2073 CTCCCTCCTTTATATCAAGGCTCACAATAAAGCTTTACAAGCCCCAGGCAGAGCTATTGC 2132
||||||||||| ||| ||| |||||||||||||||||||||||| || ||||| |||||
Sbjct 2280 CTCCCTCCTTTTTATTAAGATTCACAATAAAGCTTTACAAGCCCCTGGTAGAGCCATTGC 2339
Query 2133 TGCAGCTATTTCACACTTGAAGGATAAACTCGATGAATCTGCGTACAAAACTTTGACCGA 2192
||| |||||||||||||||||||| ||||| ||||||||||||||||| ||| |||| ||
Sbjct 2340 TGCGGCTATTTCACACTTGAAGGAAAAACTTGATGAATCTGCGTACAAGACTCTGACAGA 2399
Query 2193 TTACCAGACAGCAACTGTAACTCTTCTTGCTCTAATGTCGGCTTCAACCGGAGAGGAACA 2252
|||||| |||||||||||||||||||||||||||||||| |||||| |||| ||||||||
Sbjct 2400 TTACCAAACAGCAACTGTAACTCTTCTTGCTCTAATGTCAGCTTCATCCGGCGAGGAACA 2459
Query 2253 TGACTGCTCCTCTGACAGAATCCTGACCAAACGGGAACTCCTCGAGAGCCAAATGCCAGT 2312
||| |||||| | ||||||||| |||||||||||||||| ||||||||||| |||||| |
Sbjct 2460 TGATTGCTCCGCAGACAGAATCTTGACCAAACGGGAACTTCTCGAGAGCCAGATGCCA-T 2518
Query 2313 T-CTTAGAAGCCTTGTC-TTGGGCGACTCACAGCCACAACAATCCT 2356
| ||||||| ||| ||| |||| ||||| ||||||||||||||||
Sbjct 2519 TGCTTAGAACCCTCGTCCTTGGT-GACTCGCAGCCACAACAATCCT 2563
Score = 425 bits (230), Expect = 7e-118
Identities = 511/636 (80%), Gaps = 61/636 (10%)
Strand=Plus/Plus
Query 1 ATGGATGAAGAATTGTTGGAATTGCAAAGACAGTTCGAGTTCGCTCAGCAGGTGAACAGT 60
|||||||| ||||||||||||||||| | ||||||||||||||||| |||||| | ||
Sbjct 127 ATGGATGATGAATTGTTGGAATTGCAGCGTCAGTTCGAGTTCGCTCAACAGGTG-A-AG- 183
Query 61 TCGAGTTCGCTCAGCACGTCAGATTATCAGATGGAAATGTCGTCGAATTGGTTCAGAAGC 120
|| | || ||| ||||| || ||| ||||||| |||||||||||||||||||
Sbjct 184 TC-A--------AG--CGTGAGATTGTCGGATCGAAATGTTGTCGAATTGGTTCAGAAGC 232
Query 121 TACAAGAGCTCGGCGTCATCCAACTTGGATCTCCTTCACACCGTCACTGGAAAAGAATAC 180
| || ||||| ||||| || |||| ||||| ||||| |||||||| ||||||||||||
Sbjct 233 TTCAGGAGCTTGGCGTTAT-TGACTTCGATCTGCTTCATACCGTCACCGGAAAAGAATAC 291
Query 181 ATCACTCAGGAGCAATTGAAGAAAGAAATCGCTAGTGAGATTAGTAAATTAGGACGTGTC 240
||||||||||||||||||| ||| ||||| || ||||||| |||||||| |||||||||
Sbjct 292 ATCACTCAGGAGCAATTGAGGAATGAAATTACTCGTGAGATCAGTAAATTGGGACGTGTC 351
Query 241 TCTGTTATTGATCTTGCGGATACGATTGGTGTTGATTTTATATCATGT------GC--G- 291
|||||||||||||| || ||||||||||| ||||| ||| |||||||| || |
Sbjct 352 TCTGTTATTGATCTGGCAGATACGATTGGGGTTGA-TTTGTATCATGTGGAGAAGCAAGC 410
Query 292 -CAGGATGTTGTGTTGAGTGATCCAGAGCTAATGCTT-GTTCAAGGAGAGATTATATCAC 349
|| ||||| ||||||| |||||||| | ||||| || ||||| ||||| || |||||||
Sbjct 411 ACAAGATGTGGTGTTGAATGATCCAGGGTTAATG-TTAGTTCAGGGAGAAATAATATCAC 469
Query 350 AAAGGTATTCGGATTCAATTGCAGAAGAGATCAATGAGAGGCTTCAAGAATGCAGCCATA 409
|||| |||| |||||| ||||||||||| || ||||||||||||||||| || ||||| |
Sbjct 470 AAAGTTATTGGGATTCGATTGCAGAAGAAATTAATGAGAGGCTTCAAGAGTGTAGCCAAA 529
Query 410 TCT-CTGTGGCTGAGCTTGCT-G---G-T-CA-GTT---ACAG-GTTGG-G--ATC---- 450
| | |||||||||| |||||| | | | || ||| | | ||||| | |||
Sbjct 530 T-TGCTGTGGCTGAACTTGCTGGTCAGTTACAGGTTGGCTCTGAGTTGGTGCAATCGGTT 588
Query 451 --AGAG--TTG-C-T-G--C---AGTGAAAGCAAGGCTAGAAGGTGGACAGTTATATACA 498
|||| | | | | | | |||||||| |||||||||||||||||||||||||||
Sbjct 589 TTAGAGCCTCGACTTGGAACTTTGGTGAAAGCTAGGCTAGAAGGTGGACAGTTATATACA 648
Query 499 CCTGCTTATGTAGCGCGTGTTACGGCTATGGTTCGAGGTGCTTCCAGGGGTATCTTTGTT 558
||||||||||||| ||||| || ||||||||||||||||||||||||||||| ||||||
Sbjct 649 CCTGCTTATGTAGAACGTGTGACCGCTATGGTTCGAGGTGCTTCCAGGGGTATATTTGTT 708
Query 559 CCTTCCAATTTGTCTTTCGTTGTGGACGCCGTTGCA 594
|||||||||||||| | |||||| | || |||||
Sbjct 709 CCTTCCAATTTGTCGG-CATTGTGGGCACCATTGCA 743
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117067670940
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5