BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg314359

Length=459
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G49405.1 | Symbols:  | Uncharacterised protein family (UPF04...   782    0.0  


> AT1G49405.1 | Symbols:  | Uncharacterised protein family (UPF0497) 
| chr1:18284335-18284947 REVERSE LENGTH=459
Length=459

 Score =  782 bits (423),  Expect = 0.0
 Identities = 447/459 (97%), Gaps = 0/459 (0%)
 Strand=Plus/Plus

Query  1    ATGGTGGAGGTTCCTGGCTCTGTAGGCACAACTGCAAGCCTTTCCTTAAGGTTAGGGCAA  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  1    ATGGTGGAGGTTCCTGGCTCTGTAGGCACAACTGCAAGCCTTTCCTTAAGGTTAGGGCAG  60

Query  61   ACGGTATTAGCATTTGGCTCTCTTCTCTTCATGACCATCGGTGTTCGCTTCTACCAATTC  120
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   ATGGTATTAGCATTTGGCTCTCTTCTCTTCATGACCATCGGTGTTCGCTTCTACCAATTC  120

Query  121  ACTGCTTTCTGCTACTTGGTGACGATCATGTCTTTAGCTATACCATGGAATCTGACGTTA  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  ACTGCTTTCTGCTACTTGGTGACGATCATGTCTTTAGCTATACCATGGAATCTGACGTTA  180

Query  181  GCAATGGTAGATATCTACTGTGTTATTCTCCAGCAACCGTTTCAAAAGCCACGGATCCTT  240
            ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct  181  GCAATGGTAGATATCTATTGTGTTATTCTCCAGCAACCATTTCAAAAGCCACGGATCCTT  240

Query  241  CTCGCTGTCTCTATTGGTGATTGGGTGGTGTCTGTTCTAGTGTTGGCTTCAGCTTCATCC  300
            |||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||| 
Sbjct  241  CTCGCTATCTCTATTGGTGATTGGGTGGTGTCTGTTCTAGCGTTGGCTTCAGCGTCATCG  300

Query  301  GCAGCTAGTGTTGTTGATATTCTGCGATCAAACGAATCCTCTTGTCCTCCAACAATCTGC  360
            ||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||
Sbjct  301  GCAGCTAGTGTTGTTGATATTCTGCGATCAAACGAATCCTCCTGCCCTCCAACAATATGC  360

Query  361  AACAGATATCAGTTTGCAGCAACATTAGctttcttgacttggttcttgtctctctcttct  420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  361  AACAGATATCAGTTTGCAGCAACATTAGCTTTCTTGACTTGGTTCTTGTCTCTCTCTTCT  420

Query  421  tccctcttcaatctctggttacttccttctctgatctAA  459
            || ||||||||||||||||||||||||||||||||||||
Sbjct  421  TCTCTCTTCAATCTCTGGTTACTTCCTTCTCTGATCTAA  459



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21866470815


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5