BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314370
Length=507
Score E
Sequences producing significant alignments: (Bits) Value
AT1G49475.1 | Symbols: | AP2/B3-like transcriptional factor fa... 597 3e-170
AT3G18960.1 | Symbols: | AP2/B3-like transcriptional factor fa... 108 6e-23
AT4G01580.1 | Symbols: | AP2/B3-like transcriptional factor fa... 67.6 1e-10
> AT1G49475.1 | Symbols: | AP2/B3-like transcriptional factor
family protein | chr1:18312920-18314016 FORWARD LENGTH=904
Length=904
Score = 597 bits (323), Expect = 3e-170
Identities = 419/464 (90%), Gaps = 12/464 (3%)
Strand=Plus/Plus
Query 1 ATGCATACTAACCGGAGATCATCGGGTCGC-ATCACGTCAGCAGCAACTCAACGGCGGCT 59
||||||||||||||||||||| |||||| | |||||||| |||||||||||||| |||||
Sbjct 73 ATGCATACTAACCGGAGATCACCGGGTC-CAATCACGTCGGCAGCAACTCAACGCCGGCT 131
Query 60 AAAACCGGAGCCAGAACCGGCGGTGAAGAAATTCATCAAGGTTATTCTCTTCAAAACAAT 119
||||||||||||||||||| |||||||||||||||||||| |||||||| || || |||
Sbjct 132 AAAACCGGAGCCAGAACCGACGGTGAAGAAATTCATCAAGATTATTCTCCTCTCAAGAAT 191
Query 120 CA-AGGAAAAAATGATGAAAGTTCCGGCTAGATTTGTGAGGTTTGGTCCTAAACTCACTG 178
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 192 CATA-GAAAAAATGATGAAAGTTCCGGCTAGATTTGTGAGGTTTGGTCCTAAACTCACTG 250
Query 179 ACAATGTGACTCTCGAGACTCCTGTGGGTTTCAAGAGATCAATTCGGATTAAAAGAATCG 238
|||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 251 ACAACGTGACTCTCCAGACTCCTGTTGGTTTCAAGAGATCAATTCGGATTAAAAGAATCG 310
Query 239 GTGATGAGGTTTGGTTTGAGAAAGGTTGGAGTGAGTTTGCAGAGGCTCATTTTTTAAGTG 298
|||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||
Sbjct 311 GTGATGAGGTTTGGTTCGAGAAAGGTTGGAGTGAGTTTGCAGAGGCTCACTCTTTAAGTG 370
Query 299 ATGGTCATTTTCTGTTTTTTCATTATAAAGGGGATTCATGTTTTCGTGTTGTGATCTTTG 358
||||||| ||||||||||||||||| |||||||||| ||||| ||||||||||||||||
Sbjct 371 ATGGTCACTTTCTGTTTTTTCATTACGAAGGGGATTCTTGTTTCCGTGTTGTGATCTTTG 430
Query 359 ATGTGTCTGCTTCTGAGATTGAATATCCATTGGACAA-AGTTTATG-TCATTGAGAGTGA 416
|||||||||||||||||||||||||||||||||| | | | ||| | || |||| ||
Sbjct 431 ATGTGTCTGCTTCTGAGATTGAATATCCATTGGATGATACTG-ATGATAATAGAGAA-GA 488
Query 417 TGCTGATG-ATGATGATAAAGAAGAAGGTTTACCGGATTTGAAA 459
| | ||| |||||||| || ||| ||||||| || |||||||
Sbjct 489 AGTT-ATGGATGATGATGAACAAG--GGTTTACTGGTTTTGAAA 529
> AT3G18960.1 | Symbols: | AP2/B3-like transcriptional factor
family protein | chr3:6542509-6543676 FORWARD LENGTH=847
Length=847
Score = 108 bits (58), Expect = 6e-23
Identities = 271/370 (73%), Gaps = 29/370 (8%)
Strand=Plus/Plus
Query 80 CGGTGAAGAAATTCATCAAGGTTATTC-T--CTTCAAAACAATCAAGGAAAAAATGATGA 136
|||||||||| ||| |||| ||| || | |||| ||| || ||||| || ||||||
Sbjct 186 CGGTGAAGAAGTTCTTCAA-GTTGGTCTTACCTTC--AACGATGAAGGATAAGATGATG- 241
Query 137 AAG-TTCCGGCTAGATTTGTG-AGGT---TTGGTCCTAAACTCACTGACAATGTGAC-TC 190
||| ||||| | ||||| ||| || | ||| |||||||| | || ||| || |
Sbjct 242 AAGATTCCGCCAAGATTCGTGAAGCTACAAGGGT-CTAAACTCTCAGAGGTTGTTACAT- 299
Query 191 TCGAGACTCCTGTGGGTTTCAAGAGATCAATTCGGATTAAAAGAATCGGTGATGAGGTTT 250
| |||||||||| |||||||||| | || ||| | | ||| | |||||||| ||| |||
Sbjct 300 TAGAGACTCCTGCGGGTTTCAAGCGTTCCATTAAGCTCAAACGGATCGGTGAAGAGATTT 359
Query 251 GGTTTGA-GAAAGGTTGGAGTGAGTTTGCAGAGGCTCATTTTTTA-AGTGATGGTCATTT 308
|||| | | | |||||||||||||||||||||||||||| | || || || || ||
Sbjct 360 GGTTCCATG-AGGGTTGGAGTGAGTTTGCAGAGGCTCATTCCATCGAG-GAAGGCCACTT 417
Query 309 TCTGTTTTTTC-ATTATAAAGGGGA-TTC-ATGTTTTCGTGTTGTGATCTTTGATGTGTC 365
||| || || | | || || || || ||| | |||| ||||| | ||||| |||| ||
Sbjct 418 TCTCTTGTT-CGAATACAA-GGAGAATTCGA-GTTTCCGTGTAATAATCTTCAATGTTTC 474
Query 366 TGCTT-CTGAGATTGAATATCCATTGGACAAAGTTTATGTCATTGAGAGTGATGCTGATG 424
|||| | |||| |||||||| |||| |||| || ||||||| || || | ||||
Sbjct 475 GGCTTGC-GAGACCAAATATCCACTGGATGCAGTTCATATCATTGACAGCGACGATGAT- 532
Query 425 ATGAT-GATA 433
|| || ||||
Sbjct 533 ATAATCGATA 542
> AT4G01580.1 | Symbols: | AP2/B3-like transcriptional factor
family protein | chr4:685746-686827 FORWARD LENGTH=777
Length=777
Score = 67.6 bits (36), Expect = 1e-10
Identities = 55/64 (86%), Gaps = 2/64 (3%)
Strand=Plus/Plus
Query 227 TTAAAAGAATCGGTGATGAGGTTTGGTTTGA-GAAAGGTTGGAGTGAGTTTGCAGAGGCT 285
||||| | |||||||| ||| ||||||| | | | ||||||||||||||||||||||||
Sbjct 272 TTAAACGGATCGGTGAAGAGATTTGGTTCCATG-AGGGTTGGAGTGAGTTTGCAGAGGCT 330
Query 286 CATT 289
||||
Sbjct 331 CATT 334
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24212858854
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5