BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314380
Length=1062
Score E
Sequences producing significant alignments: (Bits) Value
AT1G49610.1 | Symbols: | F-box family protein | chr1:18361679-... 1000 0.0
AT1G60180.1 | Symbols: | pseudogene of F-box family protein | ... 67.6 2e-10
> AT1G49610.1 | Symbols: | F-box family protein | chr1:18361679-18363192
REVERSE LENGTH=1065
Length=1065
Score = 1000 bits (541), Expect = 0.0
Identities = 924/1098 (84%), Gaps = 69/1098 (6%)
Strand=Plus/Plus
Query 1 ATGGCGGTCCACAGCGAAAACAGAGACGGTGGCTCCGCCTCCGTAAGAGTCCTCAA-CAA 59
|||||| || || |||| |||||||||||||||||||||||||| ||||||||||| | |
Sbjct 1 ATGGCGCTCGACGGCGAGAACAGAGACGGTGGCTCCGCCTCCGTGAGAGTCCTCAAGC-A 59
Query 60 CCG-CTCCGAAGATTTAGACACAATAAGCTCTTTGCCTGATGTGATCCTCCAACAAATTC 118
| || ||||||| ||||| |||||||||||||||||||||||||||||||| ||| |
Sbjct 60 TTGCCT-CGAAGATGTAGACTCAATAAGCTCTTTGCCTGATGTGATCCTCCAAGAAAACC 118
Query 119 TCTCCTTAATCCCGACCAAATACGCCATAAGAACTTCCATCTTGTCCAAACGATGGAGGC 178
|||||||||| |||||||||| |||||||||||| || |||||||||||||||||||||
Sbjct 119 TCTCCTTAATTCCGACCAAATTCGCCATAAGAACATCGGTCTTGTCCAAACGATGGAGGC 178
Query 179 ATGTTTGGTCCGAAACACCTTCTCTCTG-CTTCGATGATTGCTATAAAGTAGATGCTGAT 237
|||||||||||||||||||||| ||| | ||||||||||||||||||| |||||| ||||
Sbjct 179 ATGTTTGGTCCGAAACACCTTCCCTC-GACTTCGATGATTGCTATAAACTAGATGTTGAT 237
Query 238 TCTATAGACAAAACCCTAGCTCACTACATGTCTCGCAAGATTATGAATTTTCAGCTCTGT 297
| |||||||||||||||||||| ||||| | ||||||||||||||| |||| | |||||
Sbjct 238 TTTATAGACAAAACCCTAGCTCTCTACAGGGCTCGCAAGATTATGACTTTTGACCTCTGG 297
Query 298 ACCACCTACGGAGTCAATCTTCCTTACAATGA---ATGGATCAAGTTCGCCATGTCCCGA 354
| |||| ||||| ||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 298 ATCACCAACGGAATCAATCTTCCTTACATTGATGGATGGATCAAGTTCGCCATGTCCCGA 357
Query 355 AACGTCGAGAATCTGTTTCTG-GATTTCGGTTACC--TTAAGTATGAAT-TTCCTGATTC 410
||||| ||||||||||||||| | ||||| || | ||| ||||| | |||||||||
Sbjct 358 AACGTGGAGAATCTGTTTCTGAG-TTTCGATTTTCGGTTA--TATGA-TGTTCCTGATTA 413
Query 411 CTTGTACATCAACTCCTCTAAGCTTTCTTTGCGTTGTTGCAAATTCTCTGATGAATCCAA 470
|||||||||||| |||||| | | | || || |||| |||
Sbjct 414 CTTGTACATCAATTCCTCT--G-T--CAA-GC--------AA---CTCT-------CCAT 449
Query 471 TGCTAATATTATTTCTGGTTGTCCGATTCTCGAAAGCTTAAAACTGGAATTTTGTGATGA 530
|||||| ||| ||||||||||||||||| |||||||||||| | || | ||||||||| |
Sbjct 450 TGCTAAGATTCTTTCTGGTTGTCCGATTATCGAAAGCTTAACATTGCATTTTTGTGATCA 509
Query 531 ACTGAGGGTTCTTGATCTCACCAAATCACCGAGTCTGAAAATATTAGAAATCG-T--TC- 586
||||| |||||||||||||||||||||||||||| |||||||||| |||||| | |
Sbjct 510 ACTGATGGTTCTTGATCTCACCAAATCACCGAGTTTGAAAATATTGGAAATCCATGGTAG 569
Query 587 C-------C-AAACTAGACATTCGCTTTTGCGCACTTGACA-ACCTGAATGCTGATTTTC 637
| | ||| |||||||| |||||||| ||||| | | | | || ||| |||| |
Sbjct 570 CATTTGGGCTAAAGTAGACATTTGCTTTTGCTCACTTAA-AGAGATAAAGGCTAATTTCC 628
Query 638 TTCAAGACATGGTGCTTAAGA-TACTTGACAAGTTACAGAACGTAGACAAGCTTACTTTT 696
||| |||| |||||| ||| | ||| ||||||| ||||| |||||||||||||| |||
Sbjct 629 TTCTCGACACGGTGCTCAAGTGT-CTTTACAAGTTGCAGAATGTAGACAAGCTTACCTTT 687
Query 697 GGGGAAAACTTTCTTAAGGTCCGCGGTGTTCCTTTTCCGATGTTCAAGGCTAAAGCTTTG 756
|||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 688 GGGGCAAACTTTCTTAAGGGCCGCGGTCTTCCTTTTCCGATGTTCAAGGCTAAAGCTTTG 747
Query 757 ACTCTTGAGACAATGATCTCTCAATATGTTACTCCTG-AT-G--T---T-TG--CA-A-G 804
||||| ||||||| ||||||| |||| |||| ||||| | | | | || | | |
Sbjct 748 ACTCTCGAGACAACGATCTCTAAATACGTTATTCCTGTACAGGGTGAGTATGATCCCACG 807
Query 805 TACTTGCGCGGCTTGAATCTGGATCATTGCTGGATCTTTGGGAATATTTTCCATTGGAAT 864
|||||||| || |||| ||||||||||||| |||||||| || |||| || | |||||
Sbjct 808 TACTTGCGTTGCATGAAGCTGGATCATTGCTCGATCTTTGCAAAGATTTCCCGTCGGAAT 867
Query 865 GTAGAGTCAAAGCATGTGGCTTCGTTCATGGAACTTATGCTTAAAAGGACAAAGACATTA 924
||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||
Sbjct 868 GTAGAGTCAAAGCATGTGGCTTCGTTCATGGAACTTATGATTAAAACCACAAAGAAATTA 927
Query 925 GAGAAGATGGTCGTTAGGTTGGAAAGTTATCTTGATGGAAGAGGTTTTGAAGAATTGCTT 984
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 928 GAGAAGATGGTCGTAAGGTTGGAAAGTTATCTTGATGGAAGAGGTTTCGAAGAATTGCTT 987
Query 985 GAGATGGTTCCAATGCTTTCTCGAAACAACAACGTCTCCATTGTGCTTAGCTCAACCAAT 1044
|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 988 GAGATGGTTCCAATGCTTTCTCAAAACAACAATGTCTCCATTGTGCTTAGCTCAACCAAG 1047
Query 1045 CCGAGACATAGTGTTTAG 1062
|||||||| ||| |||||
Sbjct 1048 CCGAGACAGAGTCTTTAG 1065
> AT1G60180.1 | Symbols: | pseudogene of F-box family protein
| chr1:22195525-22196685 REVERSE LENGTH=891
Length=891
Score = 67.6 bits (36), Expect = 2e-10
Identities = 50/57 (88%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 455 TCTCTGATGAATCCAATGCTAATATTATTTCTGGTTGTCCGATTCTCGAAAGCTTAA 511
|||||||||||| | ||| || ||| | ||||||||||||||||||||||||||||
Sbjct 65 TCTCTGATGAATGTATTGCGAAGATTCTATCTGGTTGTCCGATTCTCGAAAGCTTAA 121
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52007764620
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5