BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314403
Length=2508
Score E
Sequences producing significant alignments: (Bits) Value
AT1G49900.1 | Symbols: | C2H2 type zinc finger transcription f... 774 0.0
AT2G07150.1 | Symbols: | transposable element gene | chr2:2962... 106 1e-21
AT1G44140.1 | Symbols: | transposable element gene | chr1:1679... 106 1e-21
AT2G04035.1 | Symbols: | transposable element gene | chr2:1293... 100 5e-20
AT2G12640.1 | Symbols: | transposable element gene | chr2:5154... 100 5e-20
AT4G08038.1 | Symbols: | transposable element gene | chr4:4880... 91.6 3e-17
AT5G28627.1 | Symbols: | transposable element gene | chr5:1063... 80.5 7e-14
AT2G11820.1 | Symbols: | transposable element gene | chr2:4752... 58.4 3e-07
> AT1G49900.1 | Symbols: | C2H2 type zinc finger transcription
factor family | chr1:18473908-18477643 REVERSE LENGTH=2954
Length=2954
Score = 774 bits (419), Expect = 0.0
Identities = 674/790 (85%), Gaps = 46/790 (6%)
Strand=Plus/Plus
Query 1757 atgatgatgatgatgatTCTTCCTTTACACACACAGGTTTAGAATCGATCCGGCAA-GAA 1815
|||||||||||| |||| |||||| | | ||| | |||||||| || | || | |
Sbjct 1973 ATGATGATGATGTTGATCCTTCCTCCAAAGACATACGTTTAGAA--GA--AGAAAACG-A 2027
Query 1816 G-AAGAATACAGAGCCGTTATTAGGCCTTGGTTGGTTAGTGTAGCACCAAATCAACAGCG 1874
| ||| |||||||||||||||||||| | ||| ||||||||||||||||||||||||
Sbjct 2028 GTGTGAAAACAGAGCCGTTATTAGGCCTAGCTTGAATAGTGTAGCACCAAATCAACAGCG 2087
Query 1875 TTTTGGTGATGATGAAG-T--ttcttcttcttcttctctctctGAGGATGAAACCGCTGC 1931
||||||||||||||||| | ||||||||||||||||||||| | ||||||||||||||
Sbjct 2088 TTTTGGTGATGATGAAGTTCCTTCTTCTTCTTCTTCTCTCTCCAAAGATGAAACCGCTGC 2147
Query 1932 TATC--T--------G---T--C--ACA-AACGGCAATCGC--A---AAC-GC---A--- 1961
| || | | | | ||| ||| |||||||| | ||| || |
Sbjct 2148 TCTCTGTCCCACACCGCATTCACAAACACAACCGCAATCGCAAACCCAACTGCAAAAGGT 2207
Query 1962 CACCCAACCTCAACCACAGATGCTGCCTAAGTCTGATCCCTTTA--AGTGCAGCGTCTGT 2019
|||||||||||| | ||||||||||||||||||||| | ||| |||||| |||||||
Sbjct 2208 GACCCAACCTCAAACGCAGATGCTGCCTAAGTCTGAT-TC-TTACCAGTGCAACGTCTGT 2265
Query 2020 GGAAAAGAGTTTCCTTCATATCAAGCTTTAGGTGGTCACAAGGCTGGCCACAGGGTTAAG 2079
|||| |||||| ||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 2266 GGAAGAGAGTTGCCTTCATATCAAGCTTTAGGTGGTCACAAGGCTAGCCACAGGACTAAG 2325
Query 2080 CCGCCTGTTGAAAACGCAACTGGAGAAAAAACACGGCCAAAGAGGTTAGCTCCATCTGGG 2139
||||||||||||||||||||||| ||||||| |||||||||| ||| || |||||||||
Sbjct 2326 CCGCCTGTTGAAAACGCAACTGGGGAAAAAATGCGGCCAAAGAAGTTGGCCCCATCTGGG 2385
Query 2140 AAAATCCACAAGTGTTCTATTTGTCATAGATTGTTTCCAACGGGACAATCCCTCGGGGGA 2199
|||||||||||||||||||||||||| || |||| ||||||||||||||||||| |||
Sbjct 2386 AAAATCCACAAGTGTTCTATTTGTCACCGAGAGTTTTCAACGGGACAATCCCTCGGTGGA 2445
Query 2200 CACAAACGCCTTCATTACGAAGGTGTTCTCAGCGGTCACAAACGCAGCCAGGACG-AGGA 2258
||||||||||||||||||||||| |||||| |||||||||||||||||||||| | ||||
Sbjct 2446 CACAAACGCCTTCATTACGAAGGAGTTCTCCGCGGTCACAAACGCAGCCAGGA-GAAGGA 2504
Query 2259 GGCTGGTTCCCAAGGAGACAAGTCGAGTCCTAGTGGTAATGGGAGTGTTGTAACACATGT 2318
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2505 GGCTGTTTCCCAAGGAGACAAGTTGAGTCCTAGTGGTAATGGGAGTGTTGTAACACATGT 2564
Query 2319 ATCTGACCCAAAGCAGAGCCTAAAGGGATTGATAGATATTAATACAGTGCCATCGCCAGA 2378
| |||||||||||||||||| |||||||||||||| |||||||| |||||||||||| ||
Sbjct 2565 ACCTGACCCAAAGCAGAGCCGAAAGGGATTGATAGTTATTAATAAAGTGCCATCGCCGGA 2624
Query 2379 GTTTAATGAACCCGGGGACAAAGACATAGTGGAGGTTGAAAGTGCATTGTTAGCAAACAA 2438
||||||||| ||||| |||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 2625 GTTTAATGATCCCGGCGACAAAGACATATTGGAGGGTGAAAGTGCATTGTTAGCAAACAA 2684
Query 2439 GCTTCAACAAGAAAGAGGAATTACCAATACTAACAGGATAAAGGGTTTTCAtttttttAA 2498
|||| ||||||| ||||||||||||| |||| || ||| || ||||| | ||||||||
Sbjct 2685 GCTTGAACAAGATAGAGGAATTACCAGTACTCGCATGATTAACGGTTTGAAATTTTTTAA 2744
Query 2499 CTTTATGTAA 2508
|||| |||||
Sbjct 2745 CTTTCTGTAA 2754
Score = 459 bits (248), Expect = 8e-128
Identities = 342/387 (88%), Gaps = 8/387 (2%)
Strand=Plus/Plus
Query 522 GGCGCCGCCGAAGTTTGATTTGTTCGAGTGTAGTGTCTGTGGAAAAGGGTTTACTTCGTA 581
|||||| || |||| |||||||||| ||||||| |||||| ||||| ||||||||||||
Sbjct 555 GGCGCCTCCTAAGTCTGATTTGTTCAAGTGTAGCATCTGTGAAAAAGTGTTTACTTCGTA 614
Query 582 TCAAGCATTAGGTGGTCACAAGGCCAGCCACAGGGTTAA-GCAGCCACAACCGCTTATGG 640
|||||| |||||||||||||| || |||||||| |||| || | | ||| | | | |
Sbjct 615 TCAAGCTTTAGGTGGTCACAAAGCTAGCCACAGTATTAAGGCCG-CGCAA---C-T-T-G 667
Query 641 AAAACGCAGGCGCAGACGCTGGAGAGAAAACGCGGTCAAAGATGTTGTCTCCGTCTGGGA 700
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 668 AAAACGCAGGCGCAGACGCTGGAGAAAAAACGCGGTCAAAGATGTTGTCACCGTCTGGGA 727
Query 701 AAATCCACAAGTGTGATATATGTCATGTTGTGTTTGCCACGGGACAAGCACTTGGTGGAC 760
||||||||||||||||||||||||||||| ||||| |||| |||||||| || |||||||
Sbjct 728 AAATCCACAAGTGTGATATATGTCATGTTCTGTTTCCCACCGGACAAGCCCTAGGTGGAC 787
Query 761 ACAAACGCCGTCACTACGAAGGCGTTCTCGGCGGTCACAAACACGGTAATGCCGAGGTTG 820
||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||| ||
Sbjct 788 ACAAACGCCGTCACTACGAAGGCCTTCTCGGCGGTCACAAACGCGGTAATGACGAGGCTG 847
Query 821 TTCTCAAGTTAAGTCCCAATAAAAATGGGAGCATTGTAACAAAAGTGTTAGATCCAGGAC 880
|||||||||| |||||||||| ||| |||| |||||||||||||||||||| ||| ||
Sbjct 848 TTCTCAAGTTGAGTCCCAATAGCAATAAGAGCGTTGTAACAAAAGTGTTAGATGCAGAAC 907
Query 881 AGAGTTTAATGGTAAGTGACAACGTTC 907
||||||||| || |||||||||| |||
Sbjct 908 AGAGTTTAAGGGCAAGTGACAACATTC 934
Score = 283 bits (153), Expect = 5e-75
Identities = 212/238 (89%), Gaps = 13/238 (5%)
Strand=Plus/Plus
Query 919 AATGTGTTGGATCTAAAGCTGAGCCTAAGTGAAAGTGACGGAGTTCTCGTCAGTGACAAA 978
||||||||||||||||||||||||||| | ||||||||| | | || || |||||
Sbjct 1006 AATGTGTTGGATCTAAAGCTGAGCCTAGGGGAAAGTGAC-G-G----CG---GTCACAAA 1056
Query 979 GGCAGTCAGGACCAGGTTGTTCG-TGAGGAAGACAAGTGTAGTCCTAGTAGTAATGGGAG 1037
| |||||||||| |||||||| | | | ||||||||||||||||||||||| ||||||||
Sbjct 1057 GACAGTCAGGACGAGGTTGTT-GTTCATGAAGACAAGTGTAGTCCTAGTAGCAATGGGAG 1115
Query 1038 TATTGTAACAAATGTGTCGGATCCAGAGCAGAGCCTAAGGAGATTGATAGATCTTAATAA 1097
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 1116 TATTGTAACAAATGTGTCCGATCCAGAGCAGAGCGTAAGGAGATTGATAGATCTTAATAA 1175
Query 1098 CCCGCCGTCAC-CGGAGTTTGATGAATCTGGAGGCGGAGACGTGGAGGAAGTTGAAAA 1154
|||||| |||| || |||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1176 CCCGCCTTCACTCG-AGTTTGATCAATCTAGAGGCGGAGACGTGGAGGAAGTTGAAAA 1232
Score = 270 bits (146), Expect = 4e-71
Identities = 377/476 (79%), Gaps = 65/476 (14%)
Strand=Plus/Plus
Query 1359 AGAAGAAGACGATGAGTGTGTTGAGATTGGGTTGGAGAGTTGTGAACAACAGTCAATACC 1418
||| ||||||||||||||||||||||||||||||| ||||||||||||| || ||||||
Sbjct 1467 AGACGAAGACGATGAGTGTGTTGAGATTGGGTTGGGGAGTTGTGAACAAGAGCCAATACA 1526
Query 1419 AGAGCGTTTTGGTAATGATAAAGATCCTTCTTCGGATCAAAGAGTCCTAGAATCGATCCG 1478
||||||||||||| ||||||||||||||||||||||||| || | ||||||| |||||
Sbjct 1527 AGAGCGTTTTGGTGATGATAAAGATCCTTCTTCGGATCACGGAAACGTAGAATCTATCCG 1586
Query 1479 GCGAGAAGAAGACGACGCCGTTTTGATTGAGCCCTGGTTGAAA--C-G---------CAG 1526
|| ||||||||| |||||||||||| ||||||| ||||||||| | | |||
Sbjct 1587 GCTAGAAGAAGAAGACGCCGTTTTGTTTGAGCCTTGGTTGAAAAGCAGGTTGAAAAGCAG 1646
Query 1527 GGA-A-----CTGTCACAACGACAAGGTTTGGGTGACGACGAAGATTCTTTCGCGGAACA 1580
||| | | ||| |||||||||||||| ||||| ||||||||| |||| ||||||
Sbjct 1647 GGACAGGGAACAGTCTCAACGACAAGGTTTTGGTGAATACGAAGATTGTTTCTCGGAACG 1706
Query 1581 CAGCTTCTTACAAGTAGAAGA-G-----TGTTTTGGTGACGATGAAGATTCTTTCTCGGA 1634
||| |||||||||| |||||| | ||||||||||||||||||||||||||||||||
Sbjct 1707 CAGGTTCTTACAAGAAGAAGAAGAAGAGTGTTTTGGTGACGATGAAGATTCTTTCTCGGA 1766
Query 1635 --A--T--C------G-AA-C---C-GGC-a-a-gaagaa---ga-gaa-agaa-gaagC 1667
| | | | || | | ||| | | |||||| || ||| |||| |||||
Sbjct 1767 TCAGATTTCATTCTTGGAATCGAACCGGCTAGAAGAAGAATTTGAAGAAGAGAAAGAAGC 1826
Query 1668 --CC-GGTTTTCAAACGACGACGTTTTCCTTGAGCTTTTGTTGGATGGTATTGAACGATC 1724
|| |||||||||||||| ||| |||| ||||||||||||| | |||||||||| |||
Sbjct 1827 AGCCCGGTTTTCAAACGACAACGATTTCGTTGAGCTTTTGTTTCAAGGTATTGAACAATC 1886
Query 1725 AAAA--A---C-AAAGCCAAA-TCGTTCTTCTTCATCTCatgatgatgatgatgat 1773
|||| | | ||||||||| || || ||||| || | |||||||||||||||||
Sbjct 1887 AAAATCAAAACCAAAGCCAAAGTC-TTGTTCTT-AT-T-ATGATGATGATGATGAT 1938
Score = 58.4 bits (31), Expect = 3e-07
Identities = 33/34 (97%), Gaps = 0/34 (0%)
Strand=Plus/Plus
Query 1322 TAAAAGTGATAGAACCGATCGGGCTAGAAGAAGA 1355
|||||||||||||||||||||||||||| |||||
Sbjct 1442 TAAAAGTGATAGAACCGATCGGGCTAGACGAAGA 1475
> AT2G07150.1 | Symbols: | transposable element gene | chr2:2962953-2964182
FORWARD LENGTH=1230
Length=1230
Score = 106 bits (57), Expect = 1e-21
Identities = 71/78 (91%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 1159 CAAGAGGTAGCATTCCTTACAGACTGTTCTGATCTGGTGAAGATGGTGTCTTCCCCAACC 1218
||||| |||| || |||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 955 CAAGATGTAGTTTTTCTTACAGACTGTTCAGATCTGGTGGAGATGGTGTCTTCCCCAACC 1014
Query 1219 GAATGGCCGGCCTTCTCA 1236
||||||||||| ||||||
Sbjct 1015 GAATGGCCGGCTTTCTCA 1032
> AT1G44140.1 | Symbols: | transposable element gene | chr1:16791284-16791703
FORWARD LENGTH=420
Length=420
Score = 106 bits (57), Expect = 1e-21
Identities = 71/78 (91%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 1159 CAAGAGGTAGCATTCCTTACAGACTGTTCTGATCTGGTGAAGATGGTGTCTTCCCCAACC 1218
||||| |||| || |||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 158 CAAGATGTAGTTTTTCTTACAGACTGTTCAGATCTGGTGGAGATGGTGTCTTCCCCAACC 217
Query 1219 GAATGGCCGGCCTTCTCA 1236
||||||||||| ||||||
Sbjct 218 GAATGGCCGGCTTTCTCA 235
> AT2G04035.1 | Symbols: | transposable element gene | chr2:1293576-1294533
REVERSE LENGTH=958
Length=958
Score = 100 bits (54), Expect = 5e-20
Identities = 70/78 (90%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 1159 CAAGAGGTAGCATTCCTTACAGACTGTTCTGATCTGGTGAAGATGGTGTCTTCCCCAACC 1218
||||| |||||||| ||||||||||||| || |||||||||||||||||||||||||||
Sbjct 692 CAAGAAGTAGCATTTTTTACAGACTGTTCAGACCTGGTGAAGATGGTGTCTTCCCCAACC 751
Query 1219 GAATGGCCGGCCTTCTCA 1236
|||||||| || || |||
Sbjct 752 GAATGGCCAGCGTTTTCA 769
> AT2G12640.1 | Symbols: | transposable element gene | chr2:5154645-5158744
REVERSE LENGTH=4100
Length=4100
Score = 100 bits (54), Expect = 5e-20
Identities = 64/69 (93%), Gaps = 0/69 (0%)
Strand=Plus/Plus
Query 1159 CAAGAGGTAGCATTCCTTACAGACTGTTCTGATCTGGTGAAGATGGTGTCTTCCCCAACC 1218
||||| ||||| ||| ||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 3834 CAAGACGTAGCGTTCTTTACAGACTGTTCAGATTTGGTGAAGATGGTGTCTTCCCCAACC 3893
Query 1219 GAATGGCCG 1227
|||||||||
Sbjct 3894 GAATGGCCG 3902
> AT4G08038.1 | Symbols: | transposable element gene | chr4:4880126-4880860
REVERSE LENGTH=735
Length=735
Score = 91.6 bits (49), Expect = 3e-17
Identities = 69/79 (87%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 1159 CAAGAGGTAGCATTCCTTACAGACTGTTCTGATCTGGTGAAGATGGTGTCTTCCCCAACC 1218
||||| ||||| || ||| ||||||||| || |||||||||||||||||||||||||||
Sbjct 519 CAAGAAGTAGCTTTTTTTATAGACTGTTCAGACCTGGTGAAGATGGTGTCTTCCCCAACC 578
Query 1219 GAATGGCCGGCCTTCTCAG 1237
|||||||| || || ||||
Sbjct 579 GAATGGCCAGCATTTTCAG 597
> AT5G28627.1 | Symbols: | transposable element gene | chr5:10634056-10635268
FORWARD LENGTH=1213
Length=1213
Score = 80.5 bits (43), Expect = 7e-14
Identities = 68/80 (85%), Gaps = 2/80 (3%)
Strand=Plus/Plus
Query 1159 CAAGAGGTAGCATTCCTT-ACAGACTGTTCTGATCTGGTGAAGATGGTGTCTTCCCCAAC 1217
||||| ||||| || || ||| | ||||| || ||||||||||||||||||||||||||
Sbjct 980 CAAGAAGTAGC-TTTTTTAACAAAGTGTTCAGACCTGGTGAAGATGGTGTCTTCCCCAAC 1038
Query 1218 CGAATGGCCGGCCTTCTCAG 1237
||||||||| || || ||||
Sbjct 1039 CGAATGGCCAGCATTTTCAG 1058
> AT2G11820.1 | Symbols: | transposable element gene | chr2:4752782-4756899
REVERSE LENGTH=4118
Length=4118
Score = 58.4 bits (31), Expect = 3e-07
Identities = 66/82 (80%), Gaps = 6/82 (7%)
Strand=Plus/Plus
Query 1159 CAAGAGGTAGCATTCCTTACAGACTGTTCTGA--T--CTGGTGAAGATGGTGTCTTCCCC 1214
||||| ||||| || || |||||||||| | | || ||||||||||||||||||||
Sbjct 3827 CAAGAAGTAGC-TT-TTTTCAGACTGTTCAAACCTAGCTAGTGAAGATGGTGTCTTCCCC 3884
Query 1215 AACCGAATGGCCGGCCTTCTCA 1236
|||||||| ||| || || |||
Sbjct 3885 AACCGAATAGCCAGCATTTTCA 3906
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 124464185583
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5