BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg314408

Length=390
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G49975.1 | Symbols:  | INVOLVED IN: photosynthesis; LOCATED ...   638    0.0  


> AT1G49975.1 | Symbols:  | INVOLVED IN: photosynthesis; LOCATED 
IN: photosystem I, chloroplast, thylakoid membrane; EXPRESSED 
IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; 
CONTAINS InterPro DOMAIN/s: Photosystem I reaction centre 
subunit N (InterPro:IPR008796); Has 34 Blast hits to 34 proteins 
in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; 
Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 
(source: NCBI BLink). | chr1:18504802-18505597 FORWARD LENGTH=599
Length=599

 Score =  638 bits (345),  Expect = 0.0
 Identities = 375/390 (96%), Gaps = 0/390 (0%)
 Strand=Plus/Plus

Query  1    ATGAGTTCCATAAGCCAAAGCATTCTCATGGCTTTAACAGTAACTGTTAACAAATATGCT  60
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  44   ATGAGCTCCATAAGCCAAAGCATTCTCATGGCTTTAACAGTAACTGTTAACAAATATGCT  103

Query  61   TCTTCCAATGTTCAAGCTGTACGCAGAAACGATACCAAACGCGATTCTTTAACCGCTCCA  120
            |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct  104  TCTTCCAATGTTCAAGCTGTACGCAGAAACGATACCAAACGCCATTCTTTAACTGCTCCA  163

Query  121  GTCGCTGATTTAGGACGCAGAAACATCCTCTTCTCCTCAACGTCGTTCATCGCCACTGCT  180
              |||||||||||||||||||||||| ||||||||||| ||||| ||||||||| |||||
Sbjct  164  CCCGCTGATTTAGGACGCAGAAACATTCTCTTCTCCTCCACGTCTTTCATCGCCGCTGCT  223

Query  181  TTGACCAGCAGCGATCAGCTTCTCCAGAAGTATTTGAAGAAGACTGAGGAAAACAAAGCC  240
            |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  224  TTGACCAGCAGCGACCAGCTTCTCCAAAAGTATTTGAAGAAGACTGAGGAAAACAAAGCC  283

Query  241  AAGAATGATAAAGAGAGATTGGACAGTTTTTACAAGAGGAATTATAAAGACTACTTTGAG  300
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  284  AAGAATGATAAGGAGAGATTGGACAGTTTTTACAAGAGGAATTATAAAGACTACTTTGAG  343

Query  301  TTTGTTGAAGGATCTATAAAAGGAAAGACAGAAGCAGAGCTCAGTGAATCTGAAAAAAGG  360
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct  344  TTTGTTGAAGGATCTATAAAGGGAAAGACAGAAGCAGAGCTCAGTGAATCTGAAAAACGG  403

Query  361  ATTCTTGAATGGCTCAAAGCCAACAAATGA  390
            ||||| ||||||||||||||||||||||||
Sbjct  404  ATTCTGGAATGGCTCAAAGCCAACAAATGA  433



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18397996134


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5