BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314421
Length=699
Score E
Sequences producing significant alignments: (Bits) Value
AT1G50170.1 | Symbols: ATSIRB, SIRB | sirohydrochlorin ferroche... 529 2e-149
> AT1G50170.1 | Symbols: ATSIRB, SIRB | sirohydrochlorin ferrochelatase
B | chr1:18582024-18583724 FORWARD LENGTH=951
Length=951
Score = 529 bits (286), Expect = 2e-149
Identities = 306/316 (97%), Gaps = 0/316 (0%)
Strand=Plus/Plus
Query 384 GGAATTGGCTGAGCCATCTATAAAAGATGCATTCAGTTTGTGTGTACAACAAGGGGCAAA 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 426 GGAATTGGCTGAGCCATCTATAAAAGATGCATTCAGTTTGTGTGTACAACAAGGGGCGAA 485
Query 444 ACGAGTAGTTGTGAGCCCATTTTTTCTATTTCCTGGAAGACATTGGCATAAGGACATTCC 503
||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 486 ACGTGTAGTTGTGAGCCCGTTTTTTCTATTTCCTGGAAGACATTGGCATACGGACATTCC 545
Query 504 CTCGTTGACGGCTGATGCTGCAAAGGAGTTCTCTGGCATCTCATACCTCATAACTGCACC 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 546 CTCGTTGACGGCTGATGCTGCAAAGGAGTTCTCTGGCATCTCATACCTCATAACTGCACC 605
Query 564 TCTCGGCCTTCATAATCTCCTCATGGACGTTGTGAACGACAGAATCCAACATTGCTTGAG 623
|||||||| |||||||||||| |||||||||| || |||||||||||||||||||||||
Sbjct 606 TCTCGGCCCCCATAATCTCCTCCTGGACGTTGTAAATGACAGAATCCAACATTGCTTGAG 665
Query 624 CCATGTTGAAGGTGATGCTGACGAGTGTCTTGTTTGTGCTGGAACAAACAAGTGCAAGCT 683
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 666 CCATGTTGAAGGTGATGCTGACGAGTGTCTTGTTTGTGCTGGAACAAATAAGTGCAAGCT 725
Query 684 CTACAATAGTTCTTAG 699
||||||||||||||||
Sbjct 726 CTACAATAGTTCTTAG 741
Score = 398 bits (215), Expect = 5e-110
Identities = 318/363 (88%), Gaps = 25/363 (7%)
Strand=Plus/Plus
Query 6 GACGACTCAGTCGCAGTTCTTGA-TGAACCTCTCTCATGGA---CTCTCCTCCCAACGCA 61
||||||||||||||||||||| | ||||||||||| | ||| ||| |||||||| | |
Sbjct 66 GACGACTCAGTCGCAGTTCTT-AGTGAACCTCTCTTACGGAGGCCTCGCCTCCCAAAGTA 124
Query 62 ATCTCAGCGCGGATAGTCGTGTTTCATCTTCTTCATGTCAAATTACACGAA-AGAATCGT 120
||||||| ||| ||| |||||||||| ||||||| |||||||||||||||| | |||||
Sbjct 125 ATCTCAGAGCGAATAATCGTGTTTCACCTTCTTCTTGTCAAATTACACGAACA-AATCGC 183
Query 121 TCATGGGCATTTCCAGTTTCCTTAAAAGTTGAGAAATTTCAACTCCAACGAGGAACGAGA 180
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 184 TCATGGGCATTACCAGTTTCCTTTAAAGTTGAGAAATTTCAACTCCAACGAGGAAGGAGG 243
Query 181 AGAAGAGGATCACCATG---T---------------TTGGTCAAAAATGGGATTGGTGAT 222
||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 244 AGAAGAGGATCACCATGTTTTGGGGAGAGCGAAGGGTTGGTCAAAAATGGGATTGGTGAT 303
Query 223 GCTGATGGGATTATAATTGTCGATCACGGTTCTCGCCGCCGTGAATCCAATCTTATGCTT 282
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 304 GCTGATGGGATTATAATTGTTGATCACGGTTCTCGTCGCCGTGAATCCAATCTTATGCTT 363
Query 283 GAGGAGTTTGTGAAAATGTTCAAAGACAAAACTGGATACCCAATTGTGGAGCCTGCTCAT 342
|||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct 364 GAGGAGTTTGTGAAAATGTTCAAAGAAAAAACTGGTTACCCAATTGTAGAGCCTGCTCAT 423
Query 343 ATG 345
|||
Sbjct 424 ATG 426
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33857815078
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5