BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314430
Length=1554
Score E
Sequences producing significant alignments: (Bits) Value
AT1G50310.1 | Symbols: ATSTP9, STP9 | sugar transporter 9 | chr... 2560 0.0
AT3G19940.1 | Symbols: | Major facilitator superfamily protein... 1277 0.0
> AT1G50310.1 | Symbols: ATSTP9, STP9 | sugar transporter 9 | chr1:18635984-18638110
FORWARD LENGTH=1554
Length=1554
Score = 2560 bits (1386), Expect = 0.0
Identities = 1499/1555 (96%), Gaps = 2/1555 (0%)
Strand=Plus/Plus
Query 1 ATGGCTGGAGGAGCCTTTGTATCAGAGGGTGGTGGTGGAGGAAACAGCTATGAAGGCGGA 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTGGAGGAGCCTTTGTATCAGAAGGTGGTGGTGGAGGAAACAGCTATGAAGGCGGA 60
Query 61 GTCACCGTCTTTGTCATCATGACCTGTATTGTGGCCGCTATGGGAGGTCTTCTCTTTGGT 120
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 61 GTCACCGTCTTTGTCATCATGACATGTATTGTGGCCGCTATGGGAGGTCTCCTCTTTGGT 120
Query 121 TATGACCTCGGAATCTCAGGAGGAGTGACATCTATGGAGGAGTTTCTGAGCAAGTTTTTC 180
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 TATGACCTCGGTATCTCAGGTGGAGTGACATCTATGGAGGAGTTTCTGAGCAAGTTTTTC 180
Query 181 CCGGAGGTGGATAGGCAAATGCACGAAGCGAGGCGCGAGACTGCTTACTGCAAATTCGAT 240
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 181 CCGGAGGTGGATAAGCAAATGCACGAAGCAAGGCGCGAGACTGCTTACTGCAAATTCGAT 240
Query 241 AACCAATTGCTCCAGTTGTTCACTTCCTCACTCTACCTCGCGGCTCTCGTGTCTTCCTTT 300
||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 241 AACCAATTGCTACAGTTGTTCACTTCCTCACTCTACCTCGCGGCACTCGCGTCTTCCTTT 300
Query 301 GTAGCTTCGGCTGTCACAAGGAAGTACGGACGTAAAATCTCCATGTTTGTTGGAGGGGTT 360
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 301 GTAGCTTCGGCTGTCACAAGGAAGTACGGACGCAAAATCTCCATGTTTGTTGGAGGGGTT 360
Query 361 GCTTTCCTCATAGGTTCTCTATTTAACGCATTTGCCACCAATGTCGCAATGCTCATCATT 420
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||
Sbjct 361 GCTTTCCTCATAGGTTCTCTATTCAACGCATTTGCTACCAATGTCGCAATGCTCATCGTT 420
Query 421 GGTAGATTGTTGCTCGGAGTCGGTGTTGGATTTGCTAATCAGTCTACGCCGGTTTATCTC 480
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 421 GGTAGATTGTTGCTCGGAGTCGGTGTTGGATTTGCCAATCAGTCTACGCCTGTTTATCTC 480
Query 481 TCGGAGATGGCTCCTGCGAAGATCCGAGGAGCACTTAACATCGGGTTTCAAATGGCTATA 540
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TCGGAGATGGCTCCAGCGAAGATCCGAGGAGCACTTAACATCGGGTTTCAAATGGCTATA 540
Query 541 ACCATCGGGATTTTAG-TTGCGAACCTAATCAACTATGGAACATCTCAAATGGCTAGGAA 599
|||||||||||||| | |||| ||| |||||||||| ||||||||||||||||||| |||
Sbjct 541 ACCATCGGGATTTT-GATTGCAAACTTAATCAACTACGGAACATCTCAAATGGCTAAGAA 599
Query 600 CGGATGGAGAGTGTCCTTGGGTTTAGCCGCTGTTCCGGCAGTTGTTATGGTTATCGGATC 659
|||||||||||| || ||||||||||||||||| ||||||||| |||||||||| |||||
Sbjct 600 CGGATGGAGAGTATCATTGGGTTTAGCCGCTGTACCGGCAGTTATTATGGTTATTGGATC 659
Query 660 TTTTGTCTTGCCCGATACACCAAACTCGATGCTCGAGAGAGGCAAGTACGAGCAAGCGAG 719
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 660 TTTTGTCTTGCCCGATACACCAAACTCGATGCTCGAGAGAGGCAAGTACGAACAAGCGAG 719
Query 720 AGAGATGTTGCAAAAGATTCGTGGAGCTGATAACGTAGATGAGGAGTTTCAAGATCTATG 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 720 AGAGATGTTGCAAAAGATTCGTGGAGCTGATAACGTAGATGAGGAGTTTCAAGATCTGTG 779
Query 780 TGATGCTTGTGAGGCTGCTAAGAAAGTGGAGAACCCGTGGAAGAACATTTTCCAACATGC 839
|||||||||||||||||||||||||||||| || || |||||||||||||||||||| ||
Sbjct 780 TGATGCTTGTGAGGCTGCTAAGAAAGTGGATAATCCATGGAAGAACATTTTCCAACAGGC 839
Query 840 AAAATACAGACCCGCGCTTGTTTTCTGTTCTGCAATTCCTTTCTTCCAACAGATTACTGG 899
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 840 AAAATACAGACCCGCTCTTGTTTTCTGTTCTGCGATTCCTTTCTTCCAACAGATTACTGG 899
Query 900 TATCAATGTGATCATGTTCTACGCCCCGGTTCTCTTTAAAACACTCGGTTTCGCGGATGA 959
||||||||| ||||||||||||||||| ||||||||||| || |||||||| ||||||||
Sbjct 900 TATCAATGTTATCATGTTCTACGCCCCCGTTCTCTTTAAGACTCTCGGTTTTGCGGATGA 959
Query 960 TGCCTCGCTCATCTCAGCCGTTATTACGGGTGCTGTCAATGTTGTCTCTACCCTTGTCTC 1019
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 960 TGCCTCGCTCATCTCAGCGGTTATTACGGGTGCGGTCAATGTTGTCTCTACCCTTGTCTC 1019
Query 1020 CATCTATGCGGTTGACAGATACGGAAGAAGGATTCTCTTCCTTGAAGGAGGCATCCAAAT 1079
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 CATCTATGCGGTTGACAGGTACGGAAGAAGGATTCTCTTCCTTGAAGGAGGCATCCAAAT 1079
Query 1080 GATCATTAGCCAGATCGTTGTTGGTACCTTGATTGGTATGAAGTTTGGAACCACAGGATC 1139
||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1080 GATTGTTTCCCAGATCGTTGTTGGTACCTTGATTGGTATGAAGTTTGGAACCACGGGATC 1139
Query 1140 AGGGACCTTAACACCTGCAACAGCAGATTGGATCCTAGCTTTCATATGTTTGTATGTTGC 1199
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1140 AGGGACCTTAACACCTGCAACAGCAGATTGGATCCTGGCTTTCATATGTTTGTATGTTGC 1199
Query 1200 AGGATTTGCATGGTCATGGGGTCCATTAGGATGGTTAGTACCAAGTGAGATCTGTCCATT 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 AGGATTTGCATGGTCATGGGGTCCATTAGGATGGTTAGTACCAAGTGAGATCTGTCCATT 1259
Query 1260 GGAAATCAGACCAGCGGGGCAAGCCATCAACGTCTCTGTCAACATGTTCTTCACTTTTCT 1319
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1260 GGAAATCAGACCAGCGGGACAAGCCATCAACGTCTCTGTCAACATGTTCTTCACTTTCCT 1319
Query 1320 CATTGGACAATTTTTCCTCACGATGCTTTGCCACATGAAGTTTGGTCTCTTCTACTTCTT 1379
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 CATTGGACAGTTTTTCCTCACGATGCTTTGCCACATGAAGTTTGGTCTCTTCTACTTCTT 1379
Query 1380 TGGAGGAATGGTTGCAGTCATGACCGTCTTCATCTACTTCTTGTTGCCGGAGACAAAAGG 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 TGGAGGAATGGTTGCAGTCATGACCGTCTTCATCTACTTCTTGTTGCCGGAGACAAAAGG 1439
Query 1440 GGTTCCTATTGAAGAAATGGGAAGAGTATGGAAGCAACATCCGTTCTGGAAACGTTACAT 1499
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 GGTTCCAATTGAAGAAATGGGAAGAGTATGGAAGCAACATCCGTTCTGGAAACGTTACAT 1499
Query 1500 CCCAGATGATGCTGTTATTGGAGGAGGTGAAGAAAACTATGTCAAGGAGGTTTGA 1554
|||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1500 GCCAGATGATGCTGTTATTGGAGGAGGTGAAGAAAACTACGTCAAGGAGGTTTGA 1554
> AT3G19940.1 | Symbols: | Major facilitator superfamily protein
| chr3:6938211-6939975 FORWARD LENGTH=1545
Length=1545
Score = 1277 bits (691), Expect = 0.0
Identities = 1272/1549 (82%), Gaps = 53/1549 (3%)
Strand=Plus/Plus
Query 1 ATGGCTGGAGGAGCCTTTGTATCAGAGGGTGGTGGTGGAGGAA-ACAGCTATGAAGGCGG 59
||||| |||||||| ||||||||||| || || ||||| |||| | || |||||||| ||
Sbjct 1 ATGGCAGGAGGAGCTTTTGTATCAGAAGGAGGAGGTGGTGGAAGA-AGTTATGAAGGAGG 59
Query 60 AGTCACCGTC-TTTGTCATCATGACCTGTATTGTGGCCGCTATGGGAGGTCTTCTCTTTG 118
|||||||| | || || |||||||| ||||| || ||||| ||||||||||| |||||||
Sbjct 60 AGTCACCG-CATTCGTTATCATGACATGTATCGTCGCCGCCATGGGAGGTCTGCTCTTTG 118
Query 119 GTTATGACCTCGGAATCTCAGGAGGAGTGACATCTATGGAGGAGTTTCTGAGCAAGTTTT 178
|||||||||| |||||||||||||| || ||||| ||||| |||||||| | |||||| |
Sbjct 119 GTTATGACCTTGGAATCTCAGGAGGTGTTACATCAATGGAAGAGTTTCTTACCAAGTTCT 178
Query 179 TCCCGGAGGTGGATAGGCAAATGCACGAA-GCGAGGCGCGAGACTGCTTACTGCAAATTC 237
|||| | || || || || ||| | || |||| || ||| || |||||||| |||||
Sbjct 179 TCCCTCAAGTAGAGAGCCAGATG-AAAAAGGCGAAGCACGACACGGCTTACTGTAAATTT 237
Query 238 GATAACCAATTGCTCCAGTTGTTCACTTCCTCACTCTACCTCGCGGCTCTCGT-GTCTTC 296
||||||||| ||||||| ||||||||||| || ||||||||||| ||||| || | ||||
Sbjct 238 GATAACCAAATGCTCCAATTGTTCACTTCTTCTCTCTACCTCGCAGCTCTTGTAG-CTTC 296
Query 297 CTTTGTAGCTTCGGCTGTCACAAGGAAGTACGGACGTAAAATCTCCATGTTTGTTGGAGG 356
|||| | ||||| | | |||| |||||| | ||||||||| |||| |||||| |||| ||
Sbjct 297 CTTTATGGCTTCAGTTATCACTAGGAAGCATGGACGTAAAGTCTCTATGTTTATTGGTGG 356
Query 357 GGTTGCTTTCCTCATAGGTTCTCTATTTAACGCATTTGCCACCAATGTCGCAATGCTCAT 416
||||||||||||| ||| | || ||||||||||||||| ||||| ||||||||||
Sbjct 357 ACTTGCTTTCCTCATCGGTGCACTTTTTAACGCATTTGCCGTTAATGTTTCAATGCTCAT 416
Query 417 CATTGGTAGATTGTTGCTCGGAGTCGGTGTTGGATTTGCTAATCAGTCTACGCCGGTTTA 476
||| |||||| ||||||| || || |||||||||||||||||||||||||| ||||| ||
Sbjct 417 CATCGGTAGACTGTTGCTTGGTGTTGGTGTTGGATTTGCTAATCAGTCTACTCCGGTGTA 476
Query 477 TCTCTCGGAGATGGCTCCTGCGAAGATCCGAGGAGCACTT-AACATCGGGTTTCAAATGG 535
|| || || |||||||| |||||||| ||||||| || |||||||| ||||| ||||
Sbjct 477 CCTATCTGAAATGGCTCCAGCGAAGATAAGAGGAGC-TTTAAACATCGGTTTTCAGATGG 535
Query 536 CTATAACCATCGGGATTTTAGTTGCGAACCTAATCAACTATGGAACATCTCAA-ATGGCT 594
|||||||||| || || |||| ||||| || || |||||||||||||| || ||||||
Sbjct 536 CTATAACCATTGGAATCCTAGTGGCGAATCTGATTAACTATGGAACATC-AAAGATGGCT 594
Query 595 AGGAAC--GGATGGAGAGTGTCCTTGGGTTTAGCCGCTGTTCCGGCAGTTGTTATGGTTA 652
||| |||||||| || || || |||||||| |||||||| || ||||||||||| |
Sbjct 595 --CAACATGGATGGAGGGTTTCTTTAGGTTTAGCAGCTGTTCCAGCTGTTGTTATGGTGA 652
Query 653 TCGGATCTTTTGTCTTGCCCGATACACCAAACTCGATGCTCGAGAGAGGCAAGTACGAGC 712
| ||||| ||| | |||||||||||||||||||||||||||||||||||||| | |||
Sbjct 653 TTGGATCATTTATTTTGCCCGATACACCAAACTCGATGCTCGAGAGAGGCAAAAATGAGG 712
Query 713 AAGCGAGAGAGATGTTGCAA-AAGATTCGTGGAGCTGATAACGTAGATGAGGAGTTTCAA 771
|||| | | | |||||| || ||||| ||||||||||| || || ||| | |||||||||
Sbjct 713 AAGCAAAACAAATGTTG-AAGAAGATACGTGGAGCTGACAATGTTGATCATGAGTTTCAA 771
Query 772 GATCT-ATGTGATGCTTGT-GAGGCTGCTAAGAAAG-TGGAGAACCCGTGGAAGAACATT 828
||||| || ||||||| || || ||||| || |||| |||| || || |||||||||||
Sbjct 772 GATCTCAT-TGATGCT-GTTGAAGCTGCCAA-AAAGGTGGAAAATCCATGGAAGAACATC 828
Query 829 TTCCAACATGCAAAATACAGACCCGCGCTTGTT-TTCTGTTCTGCAATTCC-TTTCTTCC 886
| | | | ||| || ||||| || || | ||||| || || ||||| ||| ||||
Sbjct 829 ATGGAG-A-GTAAA-TATAGACCAGCT-TTAATCTTCTGCTCGGCCATTCCCTTT-TTCC 883
Query 887 AACAGATTACTGGTATCAATGTGATCATGTTCTACGCCCCGGTTCTCTTTAAAACACTCG 946
||||||| ||||| |||||||| || ||||||||||| || |||||||| || || || |
Sbjct 884 AACAGATCACTGGAATCAATGTCATTATGTTCTACGCTCCTGTTCTCTTCAAGACTCTTG 943
Query 947 GTTTCGCG-GATGATGCCTCGCTC--ATCTCAGCCGTTATTACGGGTGCTGTCAA--TGT 1001
|||| | | |||||||| | |||| || || || ||||| || |||| |||||| ||
Sbjct 944 GTTTTG-GTGATGATGC-T-GCTCTTATGTCTGCTGTTATAACCGGTGTTGTCAACATGC 1000
Query 1002 TGTCTCTACCCTTGTCTCCATCTATGCGGTTGACAGATACGGAAGAAGGATT-CTCTTCC 1060
| | || ||| ||||||| || || |||||||| ||||| || |||||| || || ||||
Sbjct 1001 T-T-TCAACCTTTGTCTCAATTTACGCGGTTGATAGATATGGTAGAAGG-TTGCTTTTCC 1057
Query 1061 TTGAAGGAGGCATCCAAATGATCATTAGCCAGAT-CGTTGTTGGTACCTTGATTGGTATG 1119
| ||||| ||||| |||||| ||||| | ||| | | |||||||| | || || |||
Sbjct 1058 TCGAAGGTGGCATTCAAATGTTCATTTGTCAGCTTC-TTGTTGGTTCTTTCATCGGTGC- 1115
Query 1120 AAGTTT-GGAACCACAGGATCAGGGACCTTAACACCTGCAACAGCAGATTGGATCCTAGC 1178
||| || |||||| ||||| | || || || || || ||||||||||| ||||| || ||
Sbjct 1116 AAGATTCGGAACCTCAGGAACCGGAACATTGACGCCAGCAACAGCAGACTGGATTCTTGC 1175
Query 1179 TTTCATATGTTTGTATGTTGCAGGATTTGCATGGTCATGGGGTCCATTAGGATGGTTAGT 1238
|||||||||| |||| |||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1176 TTTCATATGTGTGTACGTTGCAGGATTTGCATGGTCATGGGGTCCATTGGGATGGTTGGT 1235
Query 1239 ACCAAGTGAGATCTGTCCATTGGAAATCAGACCAGCGGGGCAAGCCATCAACGTCTCTGT 1298
||| |||||||| |||||||||||||| ||||||||||| ||||||||||||||||| ||
Sbjct 1236 ACCGAGTGAGATATGTCCATTGGAAATTAGACCAGCGGGACAAGCCATCAACGTCTCGGT 1295
Query 1299 CAACATGTTCTTCACTTTTCTCATTGGACAATT-TTTCCTCACGATGCTTTGCCACATGA 1357
||||||||||||||||||||||||||| ||||| ||| | || |||||||| |||||||
Sbjct 1296 CAACATGTTCTTCACTTTTCTCATTGGTCAATTCTTTT-TGACAATGCTTTGTCACATGA 1354
Query 1358 AGTTTGGTCTCTTCTACTTCTTTGGAGGAATGGTTGC-AGTCATGACCGTCTTCATCTAC 1416
|||||||||| ||||||||||||| | | |||||||| | ||||||| || ||||| |||
Sbjct 1355 AGTTTGGTCTATTCTACTTCTTTGCAAGCATGGTTGCGA-TCATGACGGTTTTCATTTAC 1413
Query 1417 TTCTTGTTGCCGGAGACAAAAGGGGTTCCTATTGAAGAAATGGGAAGAGTATGGAAGCAA 1476
|| |||||||||||||| ||||| |||||||||||||| ||||||||||| |||||||||
Sbjct 1414 TTTTTGTTGCCGGAGACCAAAGGTGTTCCTATTGAAGAGATGGGAAGAGTTTGGAAGCAA 1473
Query 1477 CATCCGTTCTGGAAAC-GTTACATCCCAGATGATGCTGTTATTGGAGGA 1524
||| |||||||||| || | |||||||| |||||| ||||||| |||
Sbjct 1474 CATTGGTTCTGGAAAAAGT-ATATCCCAGAAGATGCTATTATTGGTGGA 1521
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76706432760
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5