BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314445
Length=2019
Score E
Sequences producing significant alignments: (Bits) Value
AT1G50570.1 | Symbols: | Calcium-dependent lipid-binding (CaLB... 1796 0.0
AT1G50575.1 | Symbols: | Putative lysine decarboxylase family ... 1243 0.0
AT1G50530.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 159 7e-38
> AT1G50570.1 | Symbols: | Calcium-dependent lipid-binding (CaLB
domain) family protein | chr1:18726235-18728289 REVERSE LENGTH=1521
Length=1521
Score = 1796 bits (972), Expect = 0.0
Identities = 1111/1179 (94%), Gaps = 6/1179 (1%)
Strand=Plus/Plus
Query 844 GATCCTGTTATGGAGTCTCCACAGTCTGAGGCATCAATCGTCAATGGTAGTATCCATTTG 903
|||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 181 GATCCTGTTATGGAATCTCCACATTCTGAGGCATCAATCGTGAATGGTAGTATCCATTTG 240
Query 904 AATGGCAGTGGTGAAACCAAAACAAAGAATCTGGTCATGTCGTCTGATTCAGACAGTTTA 963
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 241 AATGGCAGTGGTGAAACCAAAACAAAGAATATAGTCATGTCGTCTGATTCAGACAGTTTC 300
Query 964 ATCGGTAAGCTTGAGGTTTTTGTTCACCAAGCTAGGGACATCCACAACATCTGCATCTAT 1023
|||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 301 ATCGGTGTGCTTGAGGTTTTTGTTCACCAAGCTAGGGACATCCACAACATCTGTATCTAT 360
Query 1024 CATAAGCAAGATGTGTATGCTAAGCTTTGTCTCACAAGCAATCCCGAGAGCTCTTTGTCC 1083
||||||||||||||||||||||||||||||||||||| ||||||| | ||| ||||||
Sbjct 361 CATAAGCAAGATGTGTATGCTAAGCTTTGTCTCACAAATGATCCCGAAAACTCCTTGTCC 420
Query 1084 ACAAAGATCATCAATGGTGGAGGG-AGAAACCCTGTCTTCGACGATACCCTTCACTTCGA 1142
|||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||
Sbjct 421 ACAAAGATCATCAATGGTGGAGGGCA-AAACCCTGTCTTCGACGATACCCTTCAGTTCGA 479
Query 1143 CGTGAAGAATCC-GGATTGTTCGCTTAAGTGTGAGATATATATGATGAGCCGCGTGAAGA 1201
||| ||||| || |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 480 CGTTAAGAA-CCTGGATTGTTCGCTTAAGTGTGAGATATTTATGATGAGCCGCGTGAAGA 538
Query 1202 ATTATCTTGAGGATCAGTTACTTGGATTCACTCTTGTACCTTTGTCTGAAGTGATTGTGA 1261
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 539 ATTATCTTGAGGATCAGTTACTTGGATTCTCTCTTGTACCTTTGTCTGAAGTGATTGTGA 598
Query 1262 GGAATGGGAAATTGGAGAAAGAGTTCTCTCTTTCGTCAACCGATTTGTATCACTCTCCTG 1321
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 599 GGAATGGGAAATTGGAGAAAGAGTTCTCCCTTTCTTCAACCGATTTGTATCACTCTCCTG 658
Query 1322 CAGGTTTTGTTGAGTTGTCTCTCTCGTACGCAGGAGATTCGCCCGACGTGATGCACATTC 1381
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 659 CAGGTTTTGTCGAGTTGTCTCTCTCGTACGCAGGAGATTCGCCTGACGTGATGCATATTC 718
Query 1382 CTGCGGTGCCAACTGCAGATGAGACCGAGTTGGCTCCTATCGAGTTTGATGAGAGTGAGT 1441
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 CTGCGGTTCCAACTGCGGATGAGACCGAGTTGGCTCCTATCGAGTTTGATGAGAGTGAGT 778
Query 1442 TTTTGGATCCAAAGATTGTCTGTGAAAACAATCAAATGGTGTCTAAGTACTTTTCCACTA 1501
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 779 TTTTGGATCCAAAGATTGTCTGTGAAAACAATCAAATGGTGTCTAAGTACTTCTCCACTA 838
Query 1502 CTTGTTCTGATTCTGATGAATTCGCAAGCTCTGAAACCGGCTTTGTGGAAGTAAACAGCA 1561
| ||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||
Sbjct 839 CGTGTTCTGATTCTGATGATTTTGCAAGCTCTGAAACTGGCTTTGTGGAAGTAAACAGCA 898
Query 1562 TCCAGTCTGCAGTTGTTGACACTGCTGTTGAAGAAGCAGGACCGACGAATACTGTCTCAA 1621
||| ||||||||||||||| ||||||||||| ||||||| |||| | ||| |||||||||
Sbjct 899 TCCTGTCTGCAGTTGTTGAAACTGCTGTTGACGAAGCAGCACCGGCCAATTCTGTCTCAA 958
Query 1622 CAAATGAAATCTCTTCTCCATCAATTGCTGTGAGCTC-GGCTTCCTCGGGAACTCATGAT 1680
|||||| |||||| |||||||||| ||| || ||||| ||| ||||||||||||||||||
Sbjct 959 CAAATGGAATCTCATCTCCATCAACTGCAGTTAGCTCTGGC-TCCTCGGGAACTCATGAT 1017
Query 1681 GATTCAAAGCAATCAAGCGAAGGAAACAACTCAGGTTCAGAACAAGAAGCGAAGAAGCCA 1740
| |||||||||||| || |||||||||||||||| |||||||||||||||||||||||||
Sbjct 1018 GTTTCAAAGCAATCTAGTGAAGGAAACAACTCAGATTCAGAACAAGAAGCGAAGAAGCCA 1077
Query 1741 ACAGATATCATCAAGAATGGTGATTTAGATAAGACGGGTGATGAAGCAGTTGTGAAACCA 1800
|||||||||||||||| |||||||||||||||||| | ||| |||||||||||||||||
Sbjct 1078 ACAGATATCATCAAGAGTGGTGATTTAGATAAGACTGATGAAGAAGCAGTTGTGAAACCG 1137
Query 1801 GTTCTGACAGCGAATATTGAACCAGAGCACAAGGTAGTGCAGCAAGATATTGTTGACATG 1860
|||||||||| ||| |||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1138 GTTCTGACAGTGAACATTGAACCAGAGCAAAAGGTAGTGCAACAAGATATTGTTGACATG 1197
Query 1861 TACACGAAAAGCTTGCAGCAATTTACTGAATCACTGGCTAAGATGAAACTCCCTTTGGAC 1920
||||| ||||||||||||||||| ||||| |||||||||||||||||||| |||||||||
Sbjct 1198 TACACAAAAAGCTTGCAGCAATTCACTGAGTCACTGGCTAAGATGAAACTTCCTTTGGAC 1257
Query 1921 ATCGATAGCCCAACCCAATCAGAGAACTCAAGCTCCTCCCAGCAGACGCCAAAGAGTGCT 1980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 ATCGATAGCCCAACCCAATCAGAGAACTCAAGCTCCTCCCAGCAGACGCCAAAGAGTGCT 1317
Query 1981 AGCTCCCGTGTGTTCTACGGTAGTAGAGCCTTCTTCTGA 2019
||||||||||| |||||||| ||||||||||||||||||
Sbjct 1318 AGCTCCCGTGTTTTCTACGGGAGTAGAGCCTTCTTCTGA 1356
> AT1G50575.1 | Symbols: | Putative lysine decarboxylase family
protein | chr1:18728719-18730409 REVERSE LENGTH=1177
Length=1177
Score = 1243 bits (673), Expect = 0.0
Identities = 809/870 (93%), Gaps = 28/870 (3%)
Strand=Plus/Plus
Query 1 ATGGGGGTTTCGATGTTGGATTCCTCATGGAGTTTCCGATTATCCTCCAAGGTGTCTCCT 60
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 114 ATGGGGGTTTCGATGTTGGATTCCTCATGGAGTTTCCGATTATCCTCGAAGATGTCTCCT 173
Query 61 TCACCAACACAAAAACTCGCAAGCTCTTTGACAGAAAGAGTTCCAATTTCTCTGAACTTG 120
|||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||
Sbjct 174 TCACCAACACAAAAACTCGCTAGCTCTTTGACAGAAAGAGATCCAATTTCTCTGAATTTG 233
Query 121 AGGTTTGATCATTCAATTAGGGCATATTCAGTTCGAGCTCTAAAGTGCA-----G----G 171
|||||||||||||| |||||||||||||||| ||||||||||||||||| | |
Sbjct 234 AGGTTTGATCATTCCATTAGGGCATATTCAGCTCGAGCTCTAAAGTGCAGGTCTGTTAAG 293
Query 172 TCTGAGGATTTTGTTGAGAGAAGTAGCCCATTTGAGGTTAAGAAAGAGCTAGAGATTTGC 231
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 294 TCTGAGGATTTTGTTGAGAGAAGTAGCCCATTTGAGGTTAAGAAAGAGCTTGAGATTTGC 353
Query 232 TTCGACCTTGTACGTAGGCTCGGGAGAGGCATTGTGTACTTAGGTTCTGCCAGAATCCCA 291
|||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 354 TTCGACCTCGTACATAGGCTCGGGAGAGGCATTGTGTACTTAGGTTCCGCCAGAATCCCA 413
Query 292 CCAAACCATCCACATTACCTGCAAGCACAAGAGTTGAGCAGAGAAGCAGC-ACATCTGTT 350
||||||||| ||||||| |||||||||||||||||||||||||||||||| || ||||||
Sbjct 414 CCAAACCATTCACATTATCTGCAAGCACAAGAGTTGAGCAGAGAAGCAGCAAC-TCTGTT 472
Query 351 GGACTGTACTACATGGTCTGGAGCTGGACCAGGACTTATGGATGCTGTGACT-ACAGGTG 409
||||||||||||||||||||| ||||||||||| |||||||||||||||||| | |||||
Sbjct 473 GGACTGTACTACATGGTCTGGTGCTGGACCAGGGCTTATGGATGCTGTGACTGA-AGGTG 531
Query 410 CTTTGGAAGCTGAGAAACCGGTCGGTGGCATCAAAATAGAAAAAGAAGCCGGTGAATGGA 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 CTTTGGAAGCTGAGAAACCGGTCGGTGGCATCAAAATAGAAAAAGAAGCCGGTGAATGGA 591
Query 470 CTGCATCGAAGTTTCATCCTTATCTCCCTCCTCAGAATTACCATACTTGCAG-------- 521
| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 592 CCGCATCGAAGTTTCATCCATATCTCCCTCCTCAGAATTACCATACTTGCAGGTTTTTCT 651
Query 522 -----A-AA-GCATGGATTAGTAGATGCTGTGATAAGAAACAGTGTCTCTGATAAGACGG 574
| || |||||||||||||||||||||||| ||||||| ||| ||||| |||||||
Sbjct 652 CGGCGAGAAAGCATGGATTAGTAGATGCTGTGATTAGAAACAATGTATCTGAGAAGACGG 711
Query 575 CGATAATTGCACTTCCAGGTGGAATTGGCACGCTTGATGAGATGTTTGAGATTTTGGCAT 634
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 712 CGATAATTGCACTTCCAGGTGGCATTGGCACGCTCGATGAGATGTTTGAGATTTTGGCAT 771
Query 635 TGATTCAGCTCAAAAGGATTGGATCTGCTTTACTGGTTCCATTCATTGTGATGAATTATG 694
||||||||||| |||||||||||||||| || | ||||||||||||||||||||||||||
Sbjct 772 TGATTCAGCTCGAAAGGATTGGATCTGCATTGCCGGTTCCATTCATTGTGATGAATTATG 831
Query 695 ATTCTTTCTATTCAAAGCTGCTTGAATTCATTGAGACTTGCGAAAACTTGGGAACTGTTT 754
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 832 ATGCTTTCTATTCAAAGCTGCTTGAATTCATTGAGACTTGTGAAAACTTGGGAACTGTTT 891
Query 755 CTAAAGGAGAAGTTTCTGCATTGTGGAAGGTATGCAGCAACAACTTTGAAGCTTTGACAT 814
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 892 CTAAAGGAGAAGTTTCTGCACTGTGGAAGGTATGCAACAACAACTTTGAAGCTTTGACAT 951
Query 815 ATTTAGCTGAATTCTATGACTTGCCTTACG 844
| |||||||||||||||||||||||| |||
Sbjct 952 ACTTAGCTGAATTCTATGACTTGCCTGACG 981
> AT1G50530.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: Calcium-dependent lipid-binding (CaLB domain) family
protein (TAIR:AT1G50570.2); Has 10 Blast hits to 10 proteins
in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink). | chr1:18721212-18721729 REVERSE LENGTH=345
Length=345
Score = 159 bits (86), Expect = 7e-38
Identities = 98/104 (94%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 1477 ATGGTGTCTAAGTACTTTTCCACTACTTGTTCTGATTCTGATGAATTCGCAAGCTCTGAA 1536
||||||| ||| ||||||||||||||||||| |||||||||||| || ||||||||||||
Sbjct 1 ATGGTGTTTAAATACTTTTCCACTACTTGTTTTGATTCTGATGAGTTTGCAAGCTCTGAA 60
Query 1537 ACCGGCTTTGTGGAAGTAAACAGCATCCAGTCTGCAGTTGTTGA 1580
||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 61 ACCGGCTTTGTGGAAGTAAACAGCATCCAGTCTGCAGTTATTGA 104
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100049686185
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5