BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314447
Length=936
Score E
Sequences producing significant alignments: (Bits) Value
AT1G50590.1 | Symbols: | RmlC-like cupins superfamily protein ... 1520 0.0
> AT1G50590.1 | Symbols: | RmlC-like cupins superfamily protein
| chr1:18732378-18734053 REVERSE LENGTH=933
Length=933
Score = 1520 bits (823), Expect = 0.0
Identities = 899/936 (96%), Gaps = 3/936 (0%)
Strand=Plus/Plus
Query 1 ATGCCAATCTTAGAGAAATCTTCTGCTATTTATGATAAGAGGTTAGTTGTTAAGAAGCTT 60
|||||||||| ||||||||||||||||| || ||| ||||||||||||||||||||||
Sbjct 1 ATGCCAATCTCAGAGAAATCTTCTGCTA-CTA--ATACGAGGTTAGTTGTTAAGAAGCTT 57
Query 61 TTCGCAAGACAGCAACACGAAGGATTTGGTGCTGTTGTAAGAAGAAGCATCGGAAGGTTT 120
||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 TTCGCCAGACAGCTACATGAAGGATTTGGTGCTGTTGTAAGAAGAAGCATCGGAAGGTTT 117
Query 121 GAGTTCAGATACTTGGACCCATTTCTTGTGTTGGATGAATTCTCAGTTTCAGCTCCTGCA 180
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 118 GAGTTCAGATACTTCGACCCATTTCTTGTCCTGGATGAATTCTCAGTTTCAGCTCCTGCA 177
Query 181 GGATTCCCAGATCATCCTCACAGAGGATTTGAGACAGTCACTTACATGTTAGAGGGAGAA 240
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 178 GGATTCCCAGATCATCCACACAGAGGATTTGAGACAGTCACTTACATGTTAGAGGGAGAG 237
Query 241 ATTTTGCATGAAGACTGCGAAGGACACAAAGGAGTAATAAGAGAAGGAGGATTACAATGG 300
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 ATTTTGCATGAAGACTGTGAAGGACACAAAGGAGTAATAAGAGAAGGAGGATTACAATGG 297
Query 301 ATGACTGCAGGCAAAGGCATTGTTCATTCTGAAATGCCTTCTTCTAATTCCAATGGCATT 360
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 ATGACTGCAGGAAAAGGCATTGTTCATTCTGAAATGCCTTCTTCTAATTCCAATGGCATT 357
Query 361 ACTCATAACAAGGGCTTGCAGCTTTGGATCAATCTCTCCTCAAAACACAAATTAGTGGAG 420
||||| ||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||
Sbjct 358 ACTCACAACAAGGGCTTGCAGCTTTGGATCAATCTCTCCTCAAGACAAAAACTAGTGGAG 417
Query 421 CCGAGTTATCAAGAGATAGAGAGTAAAGACATAGCAGAAACAGAGAAAGATGGTGTGAGG 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 CCGAGTTATCAAGAGATAGAGAGTAAAGACATAGCAGAAACAGAGAAAGATGGTGTGAGA 477
Query 481 GTTAGAGTCATAGCAGGAGAATGGAATGGAGTTAAGTCAAAGATCTGCACAAGAACACCA 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 478 GTTAGAGTCATAGCAGGAGAATGGAATGGAGTTAAGTCAAAGATCTGCACAAGAACGCCA 537
Query 541 ACAATGTATTTAGACTTCACTCTCTCGCCGGGTTCTCGAATCTCTCAGCCCATTCCACTT 600
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 538 ACAATGTATTTAGACTTCACTCTCTCGCCGGGTTCTCGAATCTCTCAACCCATTCCACTT 597
Query 601 CATTGGAACGCGTTTGTCTATGTTCTTCAAGGCCAGGGCCATTTTGGGGATTCCAAGTTA 660
|| |||||||||||||||||||||||||||||||| || || ||||||||||||||||||
Sbjct 598 CACTGGAACGCGTTTGTCTATGTTCTTCAAGGCCATGGTCACTTTGGGGATTCCAAGTTA 657
Query 661 CAACATTCAGCCGCTGCCGCGCACCACTTGCTGGTTCTAGGCCTAGGTGGTGACCGGTTA 720
||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 658 CAACATTCAGCCGCTGCTGCGCACCACTTGCTGGTTCTAGGCCTAGGTGGTGACATGTTA 717
Query 721 GAGGCGTGGAACGGCTCTGATTCCAGTTTGCCACTTCGGTTTATCCTTGTGGCTGGTGAG 780
||||| |||||||| ||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 718 GAGGCTTGGAACGGTTCTGATTCCGGTTTGCCTCTTCGGTTTATCCTTGTGGCTGGTGAG 777
Query 781 CCTATAGGTGAACCAATGGTTCAGTTTGGTCCCTTTGTTATGAACACACAAGAAGAGATT 840
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 778 CCTATAGGTGAACCAATGGTTCAGTTTGGTCCTTTTGTTATGAACACACAAGAAGAGATT 837
Query 841 GATGAGACCATTGACGATTTTGAGAATTTTAGAAATGGGTTTGAAAAAGCTAGACATTGG 900
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 GATGAGACCATTGACGACTTTGAGAATTTTAGAAATGGGTTTGAAAAAGCTAGACATTGG 897
Query 901 AAGTCTCAAGCTGCTTCTGCCTTGGGATTGTTCTGA 936
||||||||||||||||||||||||||| ||||||||
Sbjct 898 AAGTCTCAAGCTGCTTCTGCCTTGGGACTGTTCTGA 933
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45763307917
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5