BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314462
Length=339
Score E
Sequences producing significant alignments: (Bits) Value
AT1G50790.1 | Symbols: | Plant mobile domain protein family | ... 248 2e-65
AT1G50820.1 | Symbols: | Aminotransferase-like, plant mobile d... 176 1e-43
AT1G51538.1 | Symbols: | Aminotransferase-like, plant mobile d... 87.9 5e-17
AT1G50830.1 | Symbols: | Aminotransferase-like, plant mobile d... 67.6 7e-11
> AT1G50790.1 | Symbols: | Plant mobile domain protein family
| chr1:18824050-18826488 REVERSE LENGTH=2439
Length=2439
Score = 248 bits (134), Expect = 2e-65
Identities = 159/171 (93%), Gaps = 2/171 (1%)
Strand=Plus/Minus
Query 170 TGGATGATAAAATTGCTTCAAAAATCCCAGCTTTTCTCCAAATGGGTTTGTGTAAAGCAG 229
|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 274 TGGATGCTAAAATTGCTTCAAAAATCCCAGCTTTTCTCCAAATGGGTTCGTGTAAAGCTG 215
Query 230 CCATTTTGCTAGCCCAAGAGTTGAACTTTTTGTGTGGATACCTCCAACCCCAGAA-GTTA 288
|||||| |||||||||||||||||||| ||||||||||||||||| |||||||| || |
Sbjct 214 ACATTTTTCTAGCCCAAGAGTTGAACTTGTTGTGTGGATACCTCCATCCCCAGAAAGT-A 156
Query 289 ACACTCGTAGAAAGAGCTTCCAAGTCAGGAGAAGGAGCTGAGCGTTTATGA 339
|||||||| ||||||||||| |||||||||||||||||||||||||| |||
Sbjct 155 ACACTCGTGGAAAGAGCTTCTAAGTCAGGAGAAGGAGCTGAGCGTTTCTGA 105
Score = 219 bits (118), Expect = 2e-56
Identities = 154/171 (90%), Gaps = 4/171 (2%)
Strand=Plus/Minus
Query 1 ATGAATCTCTCCATCCATGCTACTTGGGTTACAAAACTGACTTTATCTTTCTTAATCTTC 60
||||||||||| |||||||||| |||||||||||| | ||||||||||||||||||||
Sbjct 548 ATGAATCTCTCTATCCATGCTATTTGGGTTACAAATGTTCCTTTATCTTTCTTAATCTTC 489
Query 61 AGCCATTCTTTCTCCAGCTTCTCC-TTGATAAT-CTCTCCTGAGCTATCCAGAGTAGCAA 118
|||||||||||| |||| ||| || || || | || |||||||||||||||||||||||
Sbjct 488 AGCCATTCTTTCCCCAGTTTCGCCATT-AT-CTCCTTTCCTGAGCTATCCAGAGTAGCAA 431
Query 119 AAACCGGTGAACCCAAAACAGAGAAACCTAAAAGCACCATAACGTCTTCAA 169
|||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 430 AAACAGGTGAACCCAAAACAGAGAAACCTAAAAGCACCATAACATCTTCAA 380
> AT1G50820.1 | Symbols: | Aminotransferase-like, plant mobile
domain family protein | chr1:18833275-18834861 REVERSE LENGTH=1587
Length=1587
Score = 176 bits (95), Expect = 1e-43
Identities = 131/148 (89%), Gaps = 4/148 (3%)
Strand=Plus/Minus
Query 184 GCTTCAAAAATCCCAGCTTTTCTCCAAATGGGTTTGTGTAAAGCA-GCCATTTTGCTAGC 242
|||||||||||||||||||||||||||||||||| ||| |||| | |||||||| |||||
Sbjct 248 GCTTCAAAAATCCCAGCTTTTCTCCAAATGGGTTCGTGCAAAG-ATGCCATTTTTCTAGC 190
Query 243 CCAAGAGTTGAACTTTTTGTGTGGATACCTCCAACCCCAGAAGTTAACACTCGTAGAAAG 302
|||||| ||||||||||||| |||| |||||||||||||||| |||| ||||||||||||
Sbjct 189 CCAAGACTTGAACTTTTTGTTTGGAAACCTCCAACCCCAGAATTTAATACTCGTAGAAAG 130
Query 303 AGC-TTCCAAGTCAGGAGAAGGAGCTGA 329
||| || |||| | |||| |||||||
Sbjct 129 AGCCTTT-AAGTGAACAGAAAGAGCTGA 103
> AT1G51538.1 | Symbols: | Aminotransferase-like, plant mobile
domain family protein | chr1:19113183-19115273 FORWARD LENGTH=2091
Length=2091
Score = 87.9 bits (47), Expect = 5e-17
Identities = 65/74 (88%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 181 ATTGCTTCAAAAATCCCAGCTTTTCTCCAAATGGGTTTGTGTAAAGCAGCCATTTTGCTA 240
||||| ||||||||||||||||||||||||||||||| ||| ||||| ||||||| ||
Sbjct 254 ATTGCCTCAAAAATCCCAGCTTTTCTCCAAATGGGTTCGTGCAAAGCTTCCATTTTTTTA 195
Query 241 GCCCAAGAGTTGAA 254
||||| || |||||
Sbjct 194 GCCCATGATTTGAA 181
> AT1G50830.1 | Symbols: | Aminotransferase-like, plant mobile
domain family protein | chr1:18835271-18837942 REVERSE LENGTH=2672
Length=2672
Score = 67.6 bits (36), Expect = 7e-11
Identities = 59/70 (84%), Gaps = 2/70 (3%)
Strand=Plus/Minus
Query 180 AATTGCTTCAAAAATCCCAGCTTTTCTCCAAATGGGTTTGTGTAAAGCAGCCATTTT-GC 238
|||||||||||||||||||||||||||||| | || ||||||||| ||||||| ||
Sbjct 395 AATTGCTTCAAAAATCCCAGCTTTTCTCCATGTTTGTGCGTGTAAAGCTTCCATTTTTGC 336
Query 239 TAGCCCAAGA 248
|||| ||||
Sbjct 335 AAGCC-AAGA 327
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15834340935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5