BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg314474

Length=381
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G51010.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   274    4e-73
  AT1G51020.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   243    1e-63
  AT1G51030.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   167    8e-41


> AT1G51010.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G51020.1); 
Has 334 Blast hits to 303 proteins in 107 species: Archae 
- 20; Bacteria - 126; Metazoa - 41; Fungi - 13; Plants - 30; 
Viruses - 2; Other Eukaryotes - 102 (source: NCBI BLink). | 
chr1:18911597-18911845 FORWARD LENGTH=249
Length=249

 Score =  274 bits (148),  Expect = 4e-73
 Identities = 195/217 (90%), Gaps = 5/217 (2%)
 Strand=Plus/Plus

Query  1    ATGGCTAATGTTGGAAACACTAGTGGGTCTACTCGTTTTGAAGAGCTGTGTCGTGAAATT  60
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| 
Sbjct  1    ATGGCTAATGTTGGAAACACTAGTGAGTCTACTCGTTTTGAAGAGCTGTGTCGTGAAATC  60

Query  61   ACGCAGCTGAAGGATGAAATTAAGAACCTCGTGAGGGAGGACGGGCTACTTAATCATTCA  120
            |||||| |||| ||||||||| ||||||||||||||||| ||| || |||||||||| ||
Sbjct  61   ACGCAGATGAATGATGAAATTCAGAACCTCGTGAGGGAGAACGCGCAACTTAATCATCCA  120

Query  121  ATTGGTCGACCTGATTTTGGTGCCATTGAA-AAGTCCAAGAAGAAGCTAACTGATAAGAG  179
            ||||| |||||| |||||| |||||||||| ||||| | ||||||||||| |||||||||
Sbjct  121  ATTGGGCGACCTTATTTTGATGCCATTGAAGAAGTC-AGGAAGAAGCTAAATGATAAGAG  179

Query  180  AATGAAGTTGGAAGAACT-T--GAGAAGAGGAAAGAA  213
            |||||||||| |||| || |  ||||||| |||||||
Sbjct  180  AATGAAGTTGCAAGAGCTCTATGAGAAGAAGAAAGAA  216


> AT1G51020.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G51010.1). 
| chr1:18913110-18913828 FORWARD LENGTH=719
Length=719

 Score =  243 bits (131),  Expect = 1e-63
 Identities = 185/209 (89%), Gaps = 11/209 (5%)
 Strand=Plus/Plus

Query  1    ATGGCTAATGTTGGAAACACTAGTGGGTCTACTCGTTTTGAAGAGCTGTGTCGTGAAAT-  59
            |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| 
Sbjct  185  ATGGCTAATGTTGGAAACACTAGTGGGTCTACTCCTTTTGAAGAGCTGTGTCTTGAAATC  244

Query  60   TACGCAGCTGAAGGATGAAATTAAGAACCTCGTGAGGGAGGA-CGGGC-TACTTAATCAT  117
            |  | |  |||| ||||||||| ||||||||||||||||| | || || | |||||||||
Sbjct  245  TT-GAATTTGAACGATGAAATTCAGAACCTCGTGAGGGAG-ATCGCGCAT-CTTAATCAT  301

Query  118  TCAATTGGTCGACCTGATTTTGGTGCCATTGAA-AAGTCCAAGAA-GAAGCTAACTGATA  175
             |||||||||||||||||||||||||||||||| ||| ||| ||| ||||||||||||||
Sbjct  302  CCAATTGGTCGACCTGATTTTGGTGCCATTGAAGAAG-CCA-GAAAGAAGCTAACTGATA  359

Query  176  AGAGAATGAAGTTGGAAGAACT-TGAGAA  203
            |||||||||||||| |||| || || |||
Sbjct  360  AGAGAATGAAGTTGCAAGAGCTCTGTGAA  388


> AT1G51030.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G51020.1); 
Has 39 Blast hits to 36 proteins in 13 species: Archae - 5; 
Bacteria - 2; Metazoa - 1; Fungi - 2; Plants - 21; Viruses 
- 0; Other Eukaryotes - 8 (source: NCBI BLink). | chr1:18915134-18915596 
FORWARD LENGTH=463
Length=463

 Score =  167 bits (90),  Expect = 8e-41
 Identities = 164/197 (83%), Gaps = 15/197 (8%)
 Strand=Plus/Plus

Query  1    ATGGCTAATGTTGGAAACACTAGTGGGTCTACTCGTT-TTGAAGAGCTGTGTCGTGAAAT  59
            |||||||||| || ||||| |||||  |||||||||| ||  |||||||| |||||||| 
Sbjct  46   ATGGCTAATGCTGAAAACAATAGTGTCTCTACTCGTTCTT-CAGAGCTGTATCGTGAAA-  103

Query  60   TA-CGCAGCTGAAGGATGAAATTAAGAACCTCGTGAGGGAGGACGGGCTACTTAATCATT  118
            || ||||| || | |||||||||| ||| |||||      |||   || | |||||||  
Sbjct  104  TATCGCAGATGGACGATGAAATTATGAAACTCGT------GGA---GCAAATTAATCAGC  154

Query  119  CAATTGGTCGACCTGATTTTGGTGCCATTGAA-AAGTCCAAGAAGAAGCTAACTGATAAG  177
            |||||||||| ||||||||||||||||||||| ||| ||| |||||||||||||||||||
Sbjct  155  CAATTGGTCGGCCTGATTTTGGTGCCATTGAAGAAG-CCAGGAAGAAGCTAACTGATAAG  213

Query  178  AGAATGAAGTTGGAAGA  194
            |||||||||||||||||
Sbjct  214  AGAATGAAGTTGGAAGA  230



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17945586393


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5