BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg314474 Length=381 Score E Sequences producing significant alignments: (Bits) Value AT1G51010.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 274 4e-73 AT1G51020.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 243 1e-63 AT1G51030.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 167 8e-41 > AT1G51010.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G51020.1); Has 334 Blast hits to 303 proteins in 107 species: Archae - 20; Bacteria - 126; Metazoa - 41; Fungi - 13; Plants - 30; Viruses - 2; Other Eukaryotes - 102 (source: NCBI BLink). | chr1:18911597-18911845 FORWARD LENGTH=249 Length=249 Score = 274 bits (148), Expect = 4e-73 Identities = 195/217 (90%), Gaps = 5/217 (2%) Strand=Plus/Plus Query 1 ATGGCTAATGTTGGAAACACTAGTGGGTCTACTCGTTTTGAAGAGCTGTGTCGTGAAATT 60 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCTAATGTTGGAAACACTAGTGAGTCTACTCGTTTTGAAGAGCTGTGTCGTGAAATC 60 Query 61 ACGCAGCTGAAGGATGAAATTAAGAACCTCGTGAGGGAGGACGGGCTACTTAATCATTCA 120 |||||| |||| ||||||||| ||||||||||||||||| ||| || |||||||||| || Sbjct 61 ACGCAGATGAATGATGAAATTCAGAACCTCGTGAGGGAGAACGCGCAACTTAATCATCCA 120 Query 121 ATTGGTCGACCTGATTTTGGTGCCATTGAA-AAGTCCAAGAAGAAGCTAACTGATAAGAG 179 ||||| |||||| |||||| |||||||||| ||||| | ||||||||||| ||||||||| Sbjct 121 ATTGGGCGACCTTATTTTGATGCCATTGAAGAAGTC-AGGAAGAAGCTAAATGATAAGAG 179 Query 180 AATGAAGTTGGAAGAACT-T--GAGAAGAGGAAAGAA 213 |||||||||| |||| || | ||||||| ||||||| Sbjct 180 AATGAAGTTGCAAGAGCTCTATGAGAAGAAGAAAGAA 216 > AT1G51020.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G51010.1). | chr1:18913110-18913828 FORWARD LENGTH=719 Length=719 Score = 243 bits (131), Expect = 1e-63 Identities = 185/209 (89%), Gaps = 11/209 (5%) Strand=Plus/Plus Query 1 ATGGCTAATGTTGGAAACACTAGTGGGTCTACTCGTTTTGAAGAGCTGTGTCGTGAAAT- 59 |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| Sbjct 185 ATGGCTAATGTTGGAAACACTAGTGGGTCTACTCCTTTTGAAGAGCTGTGTCTTGAAATC 244 Query 60 TACGCAGCTGAAGGATGAAATTAAGAACCTCGTGAGGGAGGA-CGGGC-TACTTAATCAT 117 | | | |||| ||||||||| ||||||||||||||||| | || || | ||||||||| Sbjct 245 TT-GAATTTGAACGATGAAATTCAGAACCTCGTGAGGGAG-ATCGCGCAT-CTTAATCAT 301 Query 118 TCAATTGGTCGACCTGATTTTGGTGCCATTGAA-AAGTCCAAGAA-GAAGCTAACTGATA 175 |||||||||||||||||||||||||||||||| ||| ||| ||| |||||||||||||| Sbjct 302 CCAATTGGTCGACCTGATTTTGGTGCCATTGAAGAAG-CCA-GAAAGAAGCTAACTGATA 359 Query 176 AGAGAATGAAGTTGGAAGAACT-TGAGAA 203 |||||||||||||| |||| || || ||| Sbjct 360 AGAGAATGAAGTTGCAAGAGCTCTGTGAA 388 > AT1G51030.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G51020.1); Has 39 Blast hits to 36 proteins in 13 species: Archae - 5; Bacteria - 2; Metazoa - 1; Fungi - 2; Plants - 21; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | chr1:18915134-18915596 FORWARD LENGTH=463 Length=463 Score = 167 bits (90), Expect = 8e-41 Identities = 164/197 (83%), Gaps = 15/197 (8%) Strand=Plus/Plus Query 1 ATGGCTAATGTTGGAAACACTAGTGGGTCTACTCGTT-TTGAAGAGCTGTGTCGTGAAAT 59 |||||||||| || ||||| ||||| |||||||||| || |||||||| |||||||| Sbjct 46 ATGGCTAATGCTGAAAACAATAGTGTCTCTACTCGTTCTT-CAGAGCTGTATCGTGAAA- 103 Query 60 TA-CGCAGCTGAAGGATGAAATTAAGAACCTCGTGAGGGAGGACGGGCTACTTAATCATT 118 || ||||| || | |||||||||| ||| ||||| ||| || | ||||||| Sbjct 104 TATCGCAGATGGACGATGAAATTATGAAACTCGT------GGA---GCAAATTAATCAGC 154 Query 119 CAATTGGTCGACCTGATTTTGGTGCCATTGAA-AAGTCCAAGAAGAAGCTAACTGATAAG 177 |||||||||| ||||||||||||||||||||| ||| ||| ||||||||||||||||||| Sbjct 155 CAATTGGTCGGCCTGATTTTGGTGCCATTGAAGAAG-CCAGGAAGAAGCTAACTGATAAG 213 Query 178 AGAATGAAGTTGGAAGA 194 ||||||||||||||||| Sbjct 214 AGAATGAAGTTGGAAGA 230 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 17945586393 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5