BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314476
Length=1128
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20650.1 | Symbols: | mRNA capping enzyme family protein | ... 1114 0.0
> AT3G20650.1 | Symbols: | mRNA capping enzyme family protein
| chr3:7220799-7224090 REVERSE LENGTH=1633
Length=1633
Score = 1114 bits (603), Expect = 0.0
Identities = 960/1128 (85%), Gaps = 41/1128 (4%)
Strand=Plus/Plus
Query 1 ATGAAACGAGGAAATT-T-CGAATCTCCCTCAAGTTCTGATCTTCCTTCTTCATCAAGAT 58
||||||||||| ||| | ||| ||||| ||||| |||| || |||| |||| || ||||
Sbjct 152 ATGAAACGAGG--ATTCTCCGATTCTCCTTCAAGCTCTGCTCCTCCTCCTTCTTCCAGAT 209
Query 59 TCAAA-CTAAATCCCGAAGGTGATTCTGAGTTTTTAAAAGATGATGA-TAGCACCAAGAA 116
||||| || |||||||||||||||||| ||||| | ||||||| || || || |||||
Sbjct 210 TCAAATCT-AATCCCGAAGGTGATTCTCAGTTTCTGGAAGATGA-GACTA-CA--AAGAA 264
Query 117 TTTTGCTCGTAAGGTCGCTGATCATTACAGTAGAAGAACAAATCAAACTTTAGAAGAAAG 176
|||||| || || || ||||||||||||||||| |||||||| ||||| || ||||| |
Sbjct 265 TTTTGCCCGGAAAGTTGCTGATCATTACAGTAGGAGAACAAACCAAACATTGGAAGAGCG 324
Query 177 AGAATCAAGTCCTATCATTCATTTaaaaaaaCTTAATAATTGGATTAAAAGTGTGTTGAT 236
|||| | ||||| ||||||||||| || |||||||| ||||||||||||||||| |||||
Sbjct 325 AGAAGCTAGTCCCATCATTCATTTGAAGAAACTTAACAATTGGATTAAAAGTGTTTTGAT 384
Query 237 TCAGCTTTATACTCGTCGTGATGATGCAGTTCTAGACCTTGCTTGTGGGAAGGGTGGTGA 296
||||||||| |||||| ||| ||||| ||||| |||||||| |||||||||||||||||
Sbjct 385 CCAGCTTTATGCTCGTCCTGACGATGCTGTTCTCGACCTTGCCTGTGGGAAGGGTGGTGA 444
Query 297 TTTGATTAAGTGGGAGAAGGCGATG-ATCGGTTACTATGTTGGTATCGATATTGCTGAAG 355
|||||| |||||||| ||||||| | ||||| ||||||||||| || |||||||||||||
Sbjct 445 TTTGATCAAGTGGGATAAGGCGA-GAATCGGGTACTATGTTGGAATTGATATTGCTGAAG 503
Query 356 GATCGATTGAAGATTGTCGGACACGTTATAATGGTGATGCGGACCATCATCATCGCCATA 415
| ||||||||||||||||| || |||||||| |||||||| ||||||||||| || | ||
Sbjct 504 GGTCGATTGAAGATTGTCGCACGCGTTATAACGGTGATGCAGACCATCATCAACGGCGTA 563
Query 416 GAAAGTAT-AGTTTCCCAG-CCCGTTTATTGTGTGGAGATTGTTTTGAGATTGAGCTTGA 473
||||| | ||||| || | | || ||||| ||||| |||||||||||| | ||||| ||
Sbjct 564 AAAAGT-TCAGTTTTCC-GTCTCGATTATTATGTGGGGATTGTTTTGAGGTAGAGCTAGA 621
Query 474 CAAGATTCTTGAAGAGGATGCTCCTTTTGATATCTGCAGTTGCCAGTTTGCTATGCATTA 533
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 622 CAAGATTCTTGAAGAGGATGCCCCTTTTGATATCTGCAGTTGCCAGTTTGCTATGCATTA 681
Query 534 CTCTTGGACAACTGAGACCCGTGCTA-GACGAGCCTTGTCAAATGTTTCAGCATTACTTC 592
||| ||||| |||||| | ||||| | ||||||| ||| ||||||||||||| |||||||
Sbjct 682 CTCATGGACTACTGAGGCACGTGC-ACGACGAGCTTTGGCAAATGTTTCAGCTTTACTTC 740
Query 593 GTCCTGGAGGCATCTTTATTGGAACAATGCCAGACGCCAATGTTATCATAAAAAAGCTTC 652
|||| ||||| ||||||| |||||||||||||| ||||||||||| |||||||| || |
Sbjct 741 GTCCAGGAGGTGTCTTTATCGGAACAATGCCAGATGCCAATGTTATTATAAAAAAACT-C 799
Query 653 -GAGAAGCTGAAGGTCTGGAGATTGGTAATAGTGTATACTGGATTCGTTTTGGTGAAGAG 711
|||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 800 AGAGAAGCTGAAGGTTTGGAGATTGGTAATAGTGTTTACTGGATTCGTTTTGGTGAAGAG 859
Query 712 TATTCTCAAAAGAAGTTTAAAGCTAGCAGCCCCTTTGGTATC-AAGTATGTATTTCATCT 770
||||| ||||||||||| ||| |||||||||| ||||||||| || || || ||||||||
Sbjct 860 TATTCCCAAAAGAAGTTCAAATCTAGCAGCCCATTTGGTATCGAA-TACGTGTTTCATCT 918
Query 771 TGAGGATGCCGTTGATTGTCCTGAATGGATTGTGCCATTTCACGTCTTCAAATCCTTAGC 830
|||||||| |||||||||||||||||||||||||| ||| |||||||||| || |||||
Sbjct 919 CGAGGATGCTGTTGATTGTCCTGAATGGATTGTGCCCTTTAACGTCTTCAAGTCTTTAGC 978
Query 831 AGAAGAGTATGATTTAGAGCTGGTATTAGTGAAGAACTTTCATGAGTTTGTGCACGAGTA 890
|| ||||||||||||||| ||||||| |||||||||| || |||||||| || |||||
Sbjct 979 GGAGGAGTATGATTTAGAGTTGGTATTTGTGAAGAACTCCCACGAGTTTGTCCATGAGTA 1038
Query 891 CATGCAAAAA-CCTGAGTTTTTGGAGCTCATGCGAAAGCTTGGTGCTTTAGGTGATGGTA 949
||| ||||| || |||||| | || |||||| ||| |||||||||||| ||||||||||
Sbjct 1039 TATG-AAAAAGCCAGAGTTTGTCGAACTCATGAGAAGGCTTGGTGCTTTGGGTGATGGTA 1097
Query 950 --A-TCGAAACAAAAGCACACTATCAGCGGATGAATGGGAAGCCGCGTATCTCTACCTCT 1006
| | || || | ||||| ||||||| |||||||||||||| || ||| | |||||||
Sbjct 1098 GCAAT-GAT-CAGA-GCACATTATCAGCTGATGAATGGGAAGCTGCATATTTATACCTCT 1154
Query 1007 CTTTTGTGTTTAGAAAGAGAGGACAATCTGATAGG-GCTGGAACAAGAACTG-CAGGAAG 1064
||||||| || |||||||| ||| |||| ||| || ||| ||| || | | | ||| |
Sbjct 1155 CTTTTGTCTTGAGAAAGAGGGGAGAATCAGAT-GGAGCTCGAAGGAG--CGGGC-GGA-G 1209
Query 1065 GAATAACAATGGGAAAATGAACATATCGAAGGACGATATTTTGTATAT 1112
||| || ||||||||||||| | ||||| || ||| ||||||||||
Sbjct 1210 GAAGAA---TGGGAAAATGAACTTGTCGAAAGATGATGTTTTGTATAT 1254
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55321000590
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5