BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314496
Length=1545
Score E
Sequences producing significant alignments: (Bits) Value
AT1G51340.2 | Symbols: | MATE efflux family protein | chr1:190... 2483 0.0
> AT1G51340.2 | Symbols: | MATE efflux family protein | chr1:19031997-19034979
FORWARD LENGTH=1870
Length=1870
Score = 2483 bits (1344), Expect = 0.0
Identities = 1481/1548 (96%), Gaps = 6/1548 (0%)
Strand=Plus/Plus
Query 1 ATGTCTGAAGATGGATACAACACAGATTTTCCAAGAAACCCTCTTA-AAATCTTCTTTAG 59
|||||||||||||| |||||||||||||||||||||||||||| || | || ||||||||
Sbjct 28 ATGTCTGAAGATGGCTACAACACAGATTTTCCAAGAAACCCTC-TATACATTTTCTTTAG 86
Query 60 TGATTTCAGATCAGTTTTTAAACTTGATGAGCTCGGTTTAGAGATAGCTCGTATAGCTTT 119
|||||||||||||||| | ||| ||||||||||||||||||||||||| || || |||||
Sbjct 87 TGATTTCAGATCAGTTCTGAAATTTGATGAGCTCGGTTTAGAGATAGCGCGAATTGCTTT 146
Query 120 ACCTGCAGCACTTGCTTTAACAGCTGATCCTATTGCCTCTCTAGTTGACACAGCCTTCAT 179
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 147 ACCCGCAGCACTTGCTTTAACAGCTGATCCTATTGCATCTCTAGTTGACACAGCCTTCAT 206
Query 180 AGGCCAAATTGGCCCTGTAGAGCTTGCTGCAGTTGGAGTTTCTATTGCTTTGTTCAACCA 239
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 207 AGGCCAAATTGGTCCTGTAGAGCTTGCTGCAGTTGGAGTTTCTATTGCTTTATTCAACCA 266
Query 240 AGTTTCAAGAATCGCTATTTTCCCACTCGTGAGCATCACAACTTCCTTTGTAGCAGAGGA 299
|||||||||||| |||||||||||||| || |||||||||||||||||||||||||| ||
Sbjct 267 AGTTTCAAGAATTGCTATTTTCCCACTTGTTAGCATCACAACTTCCTTTGTAGCAGAAGA 326
Query 300 AGATGCTTGTAGTTCTCAGCAAGACACAGTCCAAGATCATAAAGAATGTATTGAAGCTGG 359
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 327 AGATGCTTGTAGTTCTCAGCAAGACACAGTCCGAGATCATAAAGAATGTATTGAAATTGG 386
Query 360 TATCAACAATCCAACTGAGGAAACTCA-AGAATTGATTCCTG-AAAACAATAAAGATTCT 417
||||||||||||||||||||||||| | |||||||||||||| ||||| |||||||||||
Sbjct 387 TATCAACAATCCAACTGAGGAAACT-ATAGAATTGATTCCTGAAAAAC-ATAAAGATTCT 444
Query 418 TTATCAGATGAATTTAAAACCGGTAGCAGTATCTTTAGTATTAGTAAACCTCCAGCCAAG 477
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 445 TTATCAGATGAATTTAAAACCAGTAGCAGTATCTTTAGTATTAGTAAACCTCCAGCCAAG 504
Query 478 AAAAGAAACATACCATCAGCTTCATCTGCTTTAATCATTGGAGGCTTTCTTGGCCTTTTC 537
||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 505 AAAAGAAACATACCATCAGCTTCATCTGCTTTAATCATTGGAGGCGTTCTCGGCCTTTTT 564
Query 538 CAAGCTGTGTTTCTTATATCCGCAGCCAAACCTCTCTTGAGTTTCATGGGAGTTAAACAC 597
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 565 CAAGCCGTGTTTCTTATATCCGCAGCCAAACCTCTCTTGAGTTTCATGGGAGTAAAACAC 624
Query 598 GATTCTCCAATGCTGAGACCTGCTCAGAGATATCTATCTCTGAGATCACTTGGTGCACCC 657
|||||||||||| |||||||| ||||||||||||||||| | |||||||||||||||||
Sbjct 625 GATTCTCCAATGATGAGACCTTCTCAGAGATATCTATCTTTAAGATCACTTGGTGCACCA 684
Query 658 GCTGTTTTACTCTCACTCGCGGCACAAGGCGTTTTCCGCGGATTTAAAGACACCACAACT 717
|||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 685 GCTGTTCTACTCTCACTTGCGGCACAAGGCGTTTTCCGCGGATTTAAAGACACGACAACT 744
Query 718 CCGCTATTTGCTACTGTGATTGGAGATGTCACAAACATAATTCTCGACCCGATTTTCATA 777
||| |||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 745 CCGTTATTCGCTACTGTGATTGGAGATGTAACAAACATAATACTCGACCCGATTTTCATA 804
Query 778 TTCGTTTTCCGCCTAGGCGTAACAGGAGCAGCCACTGCTCATGTTATATCCCAATACCTT 837
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 805 TTTGTTTTCCGCCTAGGCGTAACAGGAGCAGCCACTGCTCATGTTATATCCCAATACCTT 864
Query 838 ATGTGTGGAATACTCTTGTGGAAACTGATGGGTCAAGTTGATATCTTCAACATGAGTACC 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 865 ATGTGTGGAATACTCTTGTGGAAACTGATGGGTCAAGTTGATATCTTCAACATGAGTACC 924
Query 898 AAACATCTTCAGTTCTGTAGATTCATGAAAAATGGCTTTCTTTTGCTAATGAGAGTAATC 957
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 925 AAACATCTTCAGTTCTGTAGATTCATGAAAAATGGCTTTCTTTTGCTGATGAGAGTAATT 984
Query 958 GCGGTGACATTCTGTGTAACTCTTTCCGCGTCACTAGCTGCACGAGAAGGATCAACTTCC 1017
|| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 985 GCAGTAACATTCTGTGTAACTCTCTCCGCGTCACTAGCTGCACGAGAAGGATCAACTTCC 1044
Query 1018 ATGGCAGCTTTCCAAGTTTGCTTGCAGGTTTGGTTAGCTACTTCACTTCTTGCAGACGGG 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1045 ATGGCAGCTTTCCAAGTTTGCTTGCAGGTTTGGTTAGCTACTTCACTTCTTGCAGACGGG 1104
Query 1078 TTCGCTGTAGCTGGCCAGGCAATACTAGCGAGCGCGTTTGCGAAAAAGGACTACAAAAGA 1137
| ||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1105 TACGCCGTAGCTGGCCAGGCAATACTAGCGAGCGCGTTTGCCAAAAAAGACTACAAAAGA 1164
Query 1138 GCTTCAGCTACTGCTTCTCGTGTCCTGCAGTTGGGATTGGTTCTCGGTTTTGTACTTGCG 1197
|| ||||||| || |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1165 GCAGCAGCTACCGCCTCTCGTGTACTGCAGTTGGGATTGGTTCTCGGTTTTGTACTTGCG 1224
Query 1198 GTTATACTTGGAGCAGGATTGCACTTTGGAGCAAGAGTATTTACGAAAGACGATAAAGTT 1257
||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||
Sbjct 1225 GTTATACTTGGAGCAGGATTGCATTTTGGAGCAAGAGTGTTTACAAAAGACGATAAAGTT 1284
Query 1258 TTACACCTAATTAGCATAGGACTTCCGTTTGTGGCAGGGACACAACCAATTAATGCCTTA 1317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1285 TTACACCTAATTAGCATAGGACTTCCGTTTGTGGCAGGGACACAACCAATTAATGCCTTA 1344
Query 1318 GCGTTTGTGTTCGATGGAGTTAACTTTGGAGCATCCGATTTCGGTTATGCCGCAGCTTCA 1377
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1345 GCGTTTGTGTTCGATGGAGTTAACTTTGGAGCATCCGATTTCGGTTACGCCGCAGCTTCA 1404
Query 1378 TTAGTAATGGTGGCTATAGTTAGCATCTTGTGTTTACTCTTTCTCTCATCGACTCATGGG 1437
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1405 TTAGTAATGGTGGCTATAGTTAGCATCTTGTGTTTGCTCTTCCTCTCATCGACTCATGGT 1464
Query 1438 TTTATTGGACTTTGGTTTGGTCTCACCATTTACATGAGTCTTAGAGCAGCCGTTGGATTC 1497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1465 TTTATTGGACTTTGGTTTGGTCTCACCATTTACATGAGTCTTAGAGCAGCCGTTGGATTC 1524
Query 1498 TGGCGGATTGGGACAGGAACAGGACCTTGGTCATTTCTTAGGAGCTGA 1545
|||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1525 TGGCGGATTGGGACAGGAACAGGACCTTGGTCTTTTCTTAGGAGCTGA 1572
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76254627855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5