BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314515
Length=1167
Score E
Sequences producing significant alignments: (Bits) Value
AT1G51530.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 529 3e-149
> AT1G51530.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:19109854-19112157 FORWARD LENGTH=1217
Length=1217
Score = 529 bits (286), Expect = 3e-149
Identities = 501/595 (84%), Gaps = 53/595 (9%)
Strand=Plus/Plus
Query 582 CAATTTTGGACCTGTGGT-AGACGTAAGGATTCCAAATCAGGAGCG-AC-GGATGTTTGG 638
|||||||||||||||| | || ||||||||||||||||||| || | || || ||| |||
Sbjct 588 CAATTTTGGACCTGTGCTAAG-CGTAAGGATTCCAAATCAGAAG-GAACAGG-TGTATGG 644
Query 639 GTTTGTCACTTTCGATAATGCTGAAACCGTGACAACCGTATTGGCTCAAGGAAACT-CTC 697
||||||| |||||| |||||||||||||||||||||| |||||| |||| |||| | |||
Sbjct 645 GTTTGTCTCTTTCGCTAATGCTGAAACCGTGACAACCATATTGGATCAA-GAAAATCCTC 703
Query 698 ATCTTATCGGTGAATCA-----G--C-T--CA---GCAGCAACTGA-ACCAGCTGTTGG- 742
|||| |||||||||||| | | | || ||||||||| | | ||| ||||||
Sbjct 704 ATCTCATCGGTGAATCACCTGTGAACGTGACAGCGGCAGCAACT-ACAGCAGGTGTTGGT 762
Query 743 AGAGAGAGAACCTTTTACATCATCCACGTCTTTCGGGAATGGACCCAAGGGATCAAGATG 802
| ||||||||||||| || | | |||||||||||||||| ||| | |||
Sbjct 763 TG-GAGAGAACCTTTT---TC-T----G----TCGGGAATGGACCCAAAGGAGC--GAT- 806
Query 803 AAAGTCGCTTTGGACCAATGATGTTTAGAAACCCGACACAGGAGATGCGGCAAAGGAGAA 862
||||| |||||| || |||| ||||| |||||| ||||||| ||||| || ||
Sbjct 807 ---GTCGC----GACCAAGGAGGTTTCGAAACGAGACACATGAGATGCTGCAAA-GA-AA 857
Query 863 -A-TGTGCAAGCTGATTTACAACAAGCCATAGAAGTAGAAGACCAAAGAAGAAGGTTATT 920
| | |||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 858 CACCGAGCAAGCTGATCCACAACAAGCCATAGAAGTAGAAGACCAAATAAGAAGGTTATC 917
Query 921 GAATCTGAAATTGCCTGACATGGAGAATAAATCTATTCACCATCACCAGCGTAGTCCTTC 980
||||||| ||||||||| ||||||||||||||||||||||||||| |||| |||||||||
Sbjct 918 GAATCTGCAATTGCCTGGCATGGAGAATAAATCTATTCACCATCATCAGCCTAGTCCTTC 977
Query 981 TATCGCTTCTCCCGCTCATTTCCCATCTCAAGTCAGGGAAGGCGATAGTGGTATAGGTGA 1040
||| | ||||| |||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 978 TATTGGTTCTCACGCTCATTTCCCATCTCAAGTCAGGGAAGGCGGTAGTGGTACAGGTGA 1037
Query 1041 GAAAGATCTTGAGCAAGTAGCAACCAGCAACGAAGAACATCAAGGGCAAGAGAGGAGTCT 1100
|||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1038 GAAAGATCTTGAACAAGTAGAAACCAGCAACGAAGAACATCAAGGGCAAGAGAAGAGTCT 1097
Query 1101 GGAGAATACTCTTCCTGATAGTTCGTTTGGTTCCTCAAATA-AATCCGGCCAAAC 1154
|||||||||||||||||||||||||||||||||| |||| | |||||||| ||||
Sbjct 1098 GGAGAATACTCTTCCTGATAGTTCGTTTGGTTCCACAAA-AGAATCCGGCGAAAC 1151
Score = 477 bits (258), Expect = 1e-133
Identities = 486/587 (83%), Gaps = 52/587 (9%)
Strand=Plus/Plus
Query 7 CCCGGCGGTC-CAACTGCGACTATCATTGAAAGGATCATAACTTTAGAACCAGAGAACGC 65
|||||| | | ||| ||||||||||||| |||||||| ||||||| ||||||||| ||||
Sbjct 7 CCCGGC-GACGCAATTGCGACTATCATTAAAAGGATCCTAACTTTGGAACCAGAGCACGC 65
Query 66 TTTCAAAATCATTGGCTATTTTCTGTTGCAGGACATTGAAGACTGTGATTTGATTCAACT 125
||| ||||||||||||||| ||||||| |||||| ||| | || ||| ||||||| |||
Sbjct 66 TTTGAAAATCATTGGCTATATTCTGTTTCAGGACTTTGGACACACTGAATTGATTCGACT 125
Query 126 TGC-TTTTG----GCACTG-A--CCAA-TCTTCCCCAAGAAATGAGTTCTTGGACTTCTC 176
||| ||||| ||| || | ||| ||||||||||||||||||||||||||||||||
Sbjct 126 TGCTTTTTGCCCTGCATTGCATTACAAGTCTTCCCCAAGAAATGAGTTCTTGGACTTCTC 185
Query 177 CAGAAACCCTAACCCTTTGTCTCCTTCGTTAACTTCGAATACATTCGGATATAACCCTGA 236
|||||||||| ||||||||| ||||||||||||| ||||||||| |||||| ||||| |
Sbjct 186 CAGAAACCCTTACCCTTTGTATCCTTCGTTAACTGGGAATACATTAGGATATTACCCTAA 245
Query 237 CTTTCGTCATGAAGGTTCGTCGcaacaacaacaacaacaaTGGAGTAACCATTTTCCATT 296
| || |||||| ||||||||| ||||||||||||||||||||||| | ||
Sbjct 246 C-TT--TCATGACGGTTCGTCG------CAACAACAACAATGGAGTAACCA---T---TT 290
Query 297 TGCCAATTTGCACCAGAGGAGTTTCTCGGCTAATGAACCCGGTTATCAGTTTCTACCAGG 356
| |||| || | || | || ||| | || | ||||| ||||||||||| ||||||
Sbjct 291 T-CCAA-TT-C-CC--A-GA-TTT-T-GG-----GTACCCGATTATCAGTTTCCACCAGG 335
Query 357 CGGTTTAGTTGATGGTTTTGGTTCTCCTGGTGGTTTAGGGT-CGCCCAGTGAAAGGATAT 415
||| | || | | | | | ||||| || |||| ||| | |||||||| || ||||
Sbjct 336 CGG--T--TT-A--GCTCT--TCCTCCTAGT-GTTTTTGGTCCTCCCAGTGAGAGAATAT 385
Query 416 CTCCGAATCAGCAACAAAGAATGATTGCTGCTCATGGCTCACCAATGTCGAACATACAAG 475
|||| |||||||||||||||||||||||| |||||||||| ||| |||||||||||||||
Sbjct 386 CTCCAAATCAGCAACAAAGAATGATTGCTACTCATGGCTCTCCAGTGTCGAACATACAAG 445
Query 476 GATCTGGACAATTTGGAGTAGAAGGTGGTTTTGGGTCGCCGAGTGAGCAAAAAAGAATGA 535
|||| |||||||||||| |||||||||||||||||||||||||||||||| || ||||||
Sbjct 446 GATCAGGACAATTTGGAATAGAAGGTGGTTTTGGGTCGCCGAGTGAGCAACAACGAATGA 505
Query 536 TCGCTCCTCTGTTCATGGGGGATTTTGGCTCTCCAATGTCGAACATC 582
| ||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 506 TTGCTCCTCAGTTCATGGGGGATTTTGGCTCTCGAATGTCGAACATC 552
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57278821845
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5