BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314546
Length=1038
Score E
Sequences producing significant alignments: (Bits) Value
AT1G51960.1 | Symbols: IQD27 | IQ-domain 27 | chr1:19310355-193... 1365 0.0
> AT1G51960.1 | Symbols: IQD27 | IQ-domain 27 | chr1:19310355-19311683
FORWARD LENGTH=1056
Length=1056
Score = 1365 bits (739), Expect = 0.0
Identities = 955/1057 (90%), Gaps = 24/1057 (2%)
Strand=Plus/Plus
Query 1 ATGGGCAGAGCAGTGAGATGGTTTAAGGGCTTTTTTGGTATGAAGAAGAGTAGAGAAAGA 60
||||||||||||| ||||||||||||||| | ||||| | ||||||||||| ||| |||
Sbjct 1 ATGGGCAGAGCAGCAAGATGGTTTAAGGGCATGTTTGGCACGAAGAAGAGTAAAGATAGA 60
Query 61 AGCCACGTTTCCGGCGGCGACTCCGACAAAGGTGGCGACCATTCCGGCGACTTCAATGTT 120
||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||
Sbjct 61 AGCCACGTTTCCGGCGGAGACTCCGTCAAAGGCGGCGACCATTCCGGCGACTTCAATGTT 120
Query 121 CCTAGGGACTCTGTTTGGCTGGGAACT-TTTCTGACTGATACAGAGAAGGAACAGAACAA 179
|||||||||||||||| | |||||||| ||| |||| ||||||||||| || ||||||||
Sbjct 121 CCTAGGGACTCTGTTTTGTTGGGAACTATTT-TGACGGATACAGAGAAAGATCAGAACAA 179
Query 180 GAACGCAATTGCGGTTGCAA---C-A--GCCACTGCTGCTGA---AGCGG---CTGCGGC 227
|||||||||||||||||||| | | |||||||| || || ||||| | |||||
Sbjct 180 GAACGCAATTGCGGTTGCAACCGCTACGGCCACTGCCGCAGACGCAGCGGTTTCGGCGGC 239
Query 228 TGTGGTTAGACTGACTAGTGAA-G--GAGCGGGAGATATGATCA-CA--AGGGAGGAGCG 281
||||||||||||||| |||||| | ||||||||||||| |||| || | |||||||||
Sbjct 240 TGTGGTTAGACTGACAAGTGAAGGAAGAGCGGGAGATATCATCATCACGAAGGAGGAGCG 299
Query 282 GTGGGCCGCCGTGAAAATACAAAAAGTCTTCAGGGGCTCTTTGGCAAGGAAAGCATTAAG 341
|||||| || || |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 300 GTGGGCTGCGGTCAAAATACAAAAAGTCTTCAGGGGCTCTTTGGCGAGGAAAGCATTAAG 359
Query 342 AGCTTTGAAAGGTATAGTGAAGCTACAAGCGTTAGTGAGAGGATACTTAGTAAGGAAACG 401
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 360 AGCTTTGAAAGGTATAGTGAAGCTACAAGCATTAGTGAGAGGATACTTAGTAAGGAAACG 419
Query 402 CGCGGCCGCGATGCTGCAAAGAATACAAACTTTGATCAGAGTCCAAACCGCTATGCGATC 461
||||||||| ||| |||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 420 CGCGGCCGCAATGTTGCAGAGCATACAAACTTTGATCAGAGTCCAAACCGCTATGCGATC 479
Query 462 GAAACGCATCAATCGCTGTCTCAACAAAGAGTACAACAACACGTTTCAACCTCGACAATC 521
||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||
Sbjct 480 AAAACGCATCAATCGCAGCCTCAACAAAGAGTACAACAACATGTTTCAACCTCGACAATC 539
Query 522 TCTT-GATAAGTTTGATGACGCAGCGTGCGATGAGAGAAGACCAAAGATTGTAGAGATGG 580
||| |||||||||||||| ||| ||| |||||| |||||| ||||||||||||||| ||
Sbjct 540 -CTTTGATAAGTTTGATGAAGCAACGTTCGATGACAGAAGAACAAAGATTGTAGAGAAGG 598
Query 581 ACGATATATACATGAGGAGATCAAGTTCAAGATCAAAATCCAGACAAGTGCACAATATTG 640
|||||| ||||||||| ||||||||||||||||||| ||| ||||||||||||||| |||
Sbjct 599 ACGATAGATACATGAGAAGATCAAGTTCAAGATCAAGATCTAGACAAGTGCACAATGTTG 658
Query 641 TTGCAATGTCTGACTATGAAGACGATTTTGTTTACAAAGCAAATGATTTGGAGTTGAGTT 700
|| |||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||
Sbjct 659 TTTCAATGTCTGACTATGAAGGCGATTTTGTTTACAAAGGGAATGATTTGGAGTTGTGTT 718
Query 701 TCTCGGATGAGAAGTGGAAGTTTGCTACGGCGCAGAACACACCGAGATTCTCGCACCACC 760
|||||||||||||||||||||||||||| ||||||||||| |||||||| | ||| ||||
Sbjct 719 TCTCGGATGAGAAGTGGAAGTTTGCTACCGCGCAGAACACGCCGAGATTATTGCATCACC 778
Query 761 ATTCTGCTAATAATCGCTACTATGTAATGCAGTCTCCAGCTAAGAGTGTTTGTGGAAACA 820
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 779 ATTCTGCTAATAATCGCTATTATGTAATGCAGTCTCCAGCTAAGAGTGTTGGTGGAAAGG 838
Query 821 CTTTGTGTGACTATGGTCGCAGTGTGAGTACTCCTGGCTACATGGAGAAAACAAAATCCT 880
||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||
Sbjct 839 CTTTGTGTGACTATGAAAGCAGTGTGAGTACTCCTGGCTACATGGAGAAAACTAAGTCCT 898
Query 881 TTAAGGCGAAGGTACGGTCACATAGCGCACCGCGTCAGCGATCTGAGAGGAAGAGGTTGT 940
||||||| || || || ||||| ||||||||||| ||||||||||||||| |||||||||
Sbjct 899 TTAAGGCAAAAGTGCGTTCACACAGCGCACCGCGCCAGCGATCTGAGAGGCAGAGGTTGT 958
Query 941 CGCTAGATGAAGTTATGGCGTCTAAGAGTAGCGTTAGCGGTGTGAGTATGTTGCAACAGC 1000
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||
Sbjct 959 CGCTAGATGAAGTTATGGCCTCTAAGAGTAGCGTTAGCGGTGTGAGTATGTCGCATCAGC 1018
Query 1001 -TACCACCACGCTATTCTTGTTCCTATGATCCGTTTT 1036
| ||||||||| |||||||||||| ||||||| |||
Sbjct 1019 AT-CCACCACGCCATTCTTGTTCCTGTGATCCGCTTT 1054
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50887190911
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5