BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314552
Length=945
Score E
Sequences producing significant alignments: (Bits) Value
AT1G52060.1 | Symbols: | Mannose-binding lectin superfamily pr... 1450 0.0
AT1G52070.1 | Symbols: | Mannose-binding lectin superfamily pr... 950 0.0
> AT1G52060.1 | Symbols: | Mannose-binding lectin superfamily
protein | chr1:19359039-19360675 REVERSE LENGTH=969
Length=969
Score = 1450 bits (785), Expect = 0.0
Identities = 887/938 (95%), Gaps = 0/938 (0%)
Strand=Plus/Plus
Query 8 TCATCTATGTATTTCTCTTTCTCTCCTCAGCCATTATTGATTCAGATGGGTTTGCAATGG 67
|||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 32 TCATCTATATATTTCTCTTTCTCTCCTCAGCCATTATAGATTCAAATGGGTTTGCAATGG 91
Query 68 CTCAAAAGTTGGAGGCTAAGGGTGGGAAAGGGGGCAAGGAATGGGATGATGGAGCCAGCC 127
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 92 CCCAAAAGTTGGAGGCTAAGGGTGGGAAAGGGGGCAAGGAATGGGATGATGGAGCCGGCC 151
Query 128 ATGATAATGTAGCAAAAGTTTATATACGAGGTGGTCTTGAAGGCATATTGTACATCAAAT 187
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 152 ATGATAATGTAGCAAAAGTTTATATACGAGGTGGTCTTGAAGGCATACAATACATCAAAT 211
Query 188 TTGAATATGTCAAAGATGGACAATCTGTAGAGGGATCAATCCATGGTGTTTTGGGTAGTG 247
|||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 212 TTGATTATGTCAAAGATGGACAGTCTGTAGAGGGATCAATCCATGGTGTTTCGGGTAGTG 271
Query 248 GTTTCACACATATGTTCGAGATTGATTACCTAAACAATGAACATATTGTCTCTGTTGACG 307
|||||||||| |||||||||||||| || | |||| |||||||||||| ||||||||||
Sbjct 272 GTTTCACACAAATGTTCGAGATTGACTATCAAAACGGTGAACATATTGTATCTGTTGACG 331
Query 308 GTTACTACGACAAATCAGGTGTGATGCAAGCGCTTGAATTCAAAACCAACCGGAAGACCT 367
|||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 332 GTTACTTTGACAAATCCGGTGTGATGCAAGCACTTGAATTCAAAACCAACCGGAAGACCT 391
Query 368 CTGAAGTGATTGGATATCCAAAGGGTAATAAAAAGTTTTCACTTGGTGGGGTCAACGGGA 427
|||||||||||||||| |||||| |||||| ||||||||||||||||||||| ||||| |
Sbjct 392 CTGAAGTGATTGGATACCCAAAGAGTAATACAAAGTTTTCACTTGGTGGGGTAAACGGAA 451
Query 428 AGATGATCACCGGCTTCCATGGATCCGCAGGGAAAGCTCTAAATTCCATTGGAGCATATT 487
||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| ||||
Sbjct 452 AGATGATCAATGGCTTCCATGGATCCGCGGGGAAAGCCCTAAATTCCATTGGAGCGTATT 511
Query 488 TAACAAAAGTTCCTCCTACTAAGTCAGAACTCGTAGGTGGTTGGGGCGGCGAATACTGGG 547
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 512 TAACAAAAGTTCCTCCTACTAAGTCAGAACTCGTAGGTGGTTGGGGCGGCGACTACTGGG 571
Query 548 ATGATGGTCCTAATTATGACGGCGTAAGAAAGGTGTATATTACTTACATTAGCACTTGTA 607
||||||||||||||||||| |||||||||||||||||| |||||||||| | ||||||||
Sbjct 572 ATGATGGTCCTAATTATGATGGCGTAAGAAAGGTGTATGTTACTTACATGAACACTTGTA 631
Query 608 TACGGAGTATCAACATCGACTACGAAAAAGACGGACAAGTTGTGACAAGTTCCCACGGGA 667
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 632 TAAGGAGTATCAACATCGACTACGAAAAAGACGGACAAGTTGTGACAAGTTCCCACGGGA 691
Query 668 ACAAGGATGGAGAGACAGAGGAGTTTGCGGTAGACTATCCAAATGAATCTTTGATATCAG 727
||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 692 ACAAGGAGGGAGAGACAGAGGAGTTTGCGATAGACTATCCAAATGAATTTTTGATATCAG 751
Query 728 TGGAGGGTACGTACGACTCAATCCTATTCCCCGATCATTACGTTTTGGTCATTACGTCGT 787
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 752 TGGAGGGTACGTACGACTCAATCCTATTCCCCGATCATTACGTTTTGGTCATTACGTCCT 811
Query 788 TGAGTTTCAAAACATCTAAAGGGAGGATATCACCCACATATGGGGTTGTGTCGGGTACCA 847
|||||||||||||||| ||||| || ||||| |||||||||||||||||||| |||||||
Sbjct 812 TGAGTTTCAAAACATCGAAAGGTAGAATATCTCCCACATATGGGGTTGTGTCTGGTACCA 871
Query 848 AATTTGTGTTGGAGAGCCAAGGTAATGCGATTGTCGGATTCCATGGGAGAAATGGTGGTG 907
|||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 872 AATTTGTGCTGGAGAGCCAAGGTAATGCAATTGTCGGATTCTATGGGAGAAATGGTGGTG 931
Query 908 CTTTCGATGCTATTGGGGTTTATTTCTCTCCGATGTGA 945
|||||||||||||||||||||||||||||||||| |||
Sbjct 932 CTTTCGATGCTATTGGGGTTTATTTCTCTCCGATATGA 969
> AT1G52070.1 | Symbols: | Mannose-binding lectin superfamily
protein | chr1:19364888-19366924 REVERSE LENGTH=1224
Length=1224
Score = 950 bits (514), Expect = 0.0
Identities = 809/949 (85%), Gaps = 30/949 (3%)
Strand=Plus/Plus
Query 3 GTTAATCATCTATGTATTTCTCTTTCTCTCCTCAGCCATTATTGATTCAGA-TGGGTTTG 61
||| ||||||||| ||||||| |||||||||||||||||||| |||||| | |||||| |
Sbjct 28 GTT-ATCATCTATATATTTCTTTTTCTCTCCTCAGCCATTATAGATTCA-ACTGGGTTGG 85
Query 62 CAATGGCTCAAAAGTTGGAGGCTAA-GGGTGGGAAAGGG-GGCAAGGAATGGGATGATGG 119
||| ||| ||||||||||| || || |||||| ||||| |||||| | ||||| |||||
Sbjct 86 CAAAGGCCCAAAAGTTGGATGC-AATTGGTGGG-AAGGGAGGCAAGCAGTGGGACGATGG 143
Query 120 AGCCAG-CCATGATAATGTAGCAAAAGTTTATATACGAGGTGGTCTTGAAGGCATATTGT 178
|| | | |||||| ||||||||||| ||||||||| |||||||||||||||||||| |
Sbjct 144 AG-CTGACCATGACAATGTAGCAAAGGTTTATATAAGAGGTGGTCTTGAAGGCATACAAT 202
Query 179 ACATCAAATTTGAATATGTCAAAGATGGACAATCTGTAGAGGGATCAATCCATGGTGTTT 238
||||||||||||| ||||||||||||||| || || |||| | ||| |||||||||||||
Sbjct 203 ACATCAAATTTGATTATGTCAAAGATGGAAAAACTATAGATGCATCTATCCATGGTGTTT 262
Query 239 TGGGTAGTGGTTTCACACATATGTTCGAGATTGATTACCTAAACAATGAACATATTGTCT 298
|||||| ||||||||||| | ||| ||||||||||| | ||||| |||| ||||||| |
Sbjct 263 CGGGTAGCGGTTTCACACAGACGTTTGAGATTGATTATCAAAACAGTGAATATATTGTAT 322
Query 299 CTGTTGACGGTTACTACGACAAATCAGGTGTGATGCAAGCGCTTGAATTCAAAACCAACC 358
||||||| || |||||||||||||| ||| ||||||||| |||||||||||||||||||
Sbjct 323 CTGTTGATGGCTACTACGACAAATCTGGTACGATGCAAGCACTTGAATTCAAAACCAACC 382
Query 359 GGAAGACCTCTGAAGTGATTGGATATCCAAAGGGTAATAAAAAGTTTTCACTTGGTGGGG 418
|||||| |||||||||||||||||||||||||||| || |||||||||||| ||||| |
Sbjct 383 TGAAGACTTCTGAAGTGATTGGATATCCAAAGGGTACTACAAAGTTTTCACTCGGTGGAG 442
Query 419 TCAACGGGAAGATGATCACCGGCTTCCATGGATCCGCAGGGAAAGCT-CTAAATTCCATT 477
|||| || |||||| | | |||||||||||||| || ||||||| | ||||| ||||||
Sbjct 443 TCAATGGCAAGATGGTGATTGGCTTCCATGGATCTGCTGGGAAAG-TCCTAAACTCCATT 501
Query 478 GGAGCATATTTAACAAAAGTTCCTCCTACTAAGTCAGAACTCGTAGGTGGT-T--GGGGC 534
|||||||||||||||| || |||||||||||||||| |||| ||||||||| | ||
Sbjct 502 GGAGCATATTTAACAACAGCTCCTCCTACTAAGTCACAACTTGTAGGTGGTCTAACCGGA 561
Query 535 GGCGAATAC-TGGGATGATGGTC-CTAATTATGACGGCGT-AAGAAAGGTGTATATTACT 591
|||||| | ||||||||||| | |||||||||| ||||| || |||| | | | | |||
Sbjct 562 GGCGAA-CCTTGGGATGATGG-CTCTAATTATGATGGCGTGAA-AAAGATATCTGTCACT 618
Query 592 TACATTAGCACT-TGTATACGGAGTATCAACATCGACTACGAAAAAGACGGACAAGTTGT 650
|||||||||||| | |||| |||||||||| | ||||| ||||| ||||| ||||||||
Sbjct 619 TACATTAGCACTCT-TATAAGGAGTATCAATGTGGACTATGAAAAGGACGGCCAAGTTGT 677
Query 651 GACAAGTTCCCACGGGAACAAGGATGGAGAGACAGAGGAGTTTGCGGTAGACTATCCAAA 710
||| ||| |||||||| ||| ||||||| ||||||||||||| | |||||||||||||
Sbjct 678 AACACGTTACCACGGGATGAAGAATGGAGATACAGAGGAGTTTGTGATAGACTATCCAAA 737
Query 711 TGAATCTTTGATATCAGTGGAGGGTACGTACGACT-CAATCCTATTCCCCGATCATTACG 769
||| | |||||||||||||||||| | || || ||| | || |||||||| || |||
Sbjct 738 TGAGTATTTGATATCAGTGGAGGG-A---AC--CTACAA-CATACTCCCCGATGATAACG 790
Query 770 TTTTGGTCATTACGTCGTTGAGTTTCAAAACATCTAAAGGGAGGATATCACCCACATATG 829
|||||||||||| |||||||| |||||||||||| |||||||| || || ||||||||||
Sbjct 791 TTTTGGTCATTAGGTCGTTGATTTTCAAAACATCAAAAGGGAGAATCTCTCCCACATATG 850
Query 830 GGGTTGTGTCGGGTACCAAATTTGTGTTGGAGAGCCAAGGTAATGCGATTGTCGGATTCC 889
|| ||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 851 GGTTTGTGTCAGGTACCAAATTTGTGTTGGAGAGCCAAGGTAATGCTATTGTTGGATTCT 910
Query 890 ATGGGAGAAATGGTGGTGCTTTCGATGCTATTGGGGTTTATTTCTCTCC 938
||||| | |||||||||||||||| ||||| || ||||| ||||||||
Sbjct 911 ATGGGCGGGATGGTGGTGCTTTCGACGCTATCGGAGTTTACTTCTCTCC 959
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46215415240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5