BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314605
Length=1902
Score E
Sequences producing significant alignments: (Bits) Value
AT1G52750.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 2843 0.0
> AT1G52750.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr1:19646465-19649261 REVERSE LENGTH=2275
Length=2275
Score = 2843 bits (1539), Expect = 0.0
Identities = 1789/1910 (94%), Gaps = 16/1910 (1%)
Strand=Plus/Plus
Query 1 ATGGCGGCATGGAAGTCGTGGATTGTGGCGGAGAAAGCACGAAGATGCTTCCGGACCATG 60
|||||||| |||||||| ||||||||||||||||||||||||||||| || |||| |||
Sbjct 54 ATGGCGGCGTGGAAGTCATGGATTGTGGCGGAGAAAGCACGAAGATGTTTAAGGACGATG 113
Query 61 TTCTTTGTGGCAGCAATGATGGCCTCTCTGTTAGCTTCCTCGTTACCGGTTCTGATCACG 120
||||||||||||||||||| ||| |||||||||||||| || ||||||||||||||||||
Sbjct 114 TTCTTTGTGGCAGCAATGACGGCGTCTCTGTTAGCTTCTTCATTACCGGTTCTGATCACG 173
Query 121 GTGGCTGATGTGGTGGTTCCTTGTCTTATCGTCTCCAGCATCACGTGCCTCACGTGCT-A 179
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||| | |
Sbjct 174 GTGGCTGATGTGGTAGTTCCTTGTCTTATCGTCTCTAGCATCACGTGCCTCACGTG-TCA 232
Query 180 CTCCCCTGCACAACATTTTCGTCAGTACAGTTTCAAGAGCTCTCTCATTGATGTACCACT 239
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 233 CTCCCCTGCACAACATTTTCGTCAGTATAGTTTCAAGACCTCTCTCATTGATGTACCACT 292
Query 240 CGTCTCCCTCCTTAGATCTCTCTTCATTATCTGTCTTTCTTGGATCTGTGAAGACACAAG 299
|||||| ||| ||||||||||| ||||||||||||| |||||| | ||||||||||||||
Sbjct 293 CGTCTCGCTCATTAGATCTCTCGTCATTATCTGTCTCTCTTGGTTATGTGAAGACACAAG 352
Query 300 ATTAGCTTATGGTCTTTATTTTGAAACAGTGATGTTATTTTCCTTTGGAGGGATACTTCT 359
||||||||||||||| ||| |||||||||| ||||||| ||||||||||||||| |||||
Sbjct 353 ATTAGCTTATGGTCTGTATCTTGAAACAGTAATGTTATCTTCCTTTGGAGGGATTCTTCT 412
Query 360 TCTTTTGGTTAAAACTTGTGTTTTCACTGTGAATTCTCA-TCTTGAGGAGGCTAAGGTCT 418
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 413 TCTTTTGGTTAAAACTTGTGTTTTCACTGTGAATTCT-ACTCTTGAGGAGGCTAAGGTCT 471
Query 419 ATTACTTCAAGATCTCATGGGGAATGCCGGTTTTGTTACTATCTTCTGCGGTTTTCGGTA 478
|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 ATCACCTCAAGATCTCATGGGGAATGCCGGTTTTGTTACTATCTTCTGCGGTTTTCGGTC 531
Query 479 TAGCTCATGTCGTGGTAGCTTATCGAAAAAGCTGTGGAGCAAGAAGGAAGCTAATGTACC 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 TAGCTCATGTCGTGGTAGCTTATCGAAAAAGCTGTGGAGCAAGAAGGAAGCTAATGTACC 591
Query 539 ACAAGATTGACCAAGAAGCTGTTCTCTCATGCAAATCCGGTTTCTCAGGTTACAAGAAGG 598
||||||||||||||||||||||||||||||| ||||| ||||| || |||||||||||||
Sbjct 592 ACAAGATTGACCAAGAAGCTGTTCTCTCATGTAAATCGGGTTTTTCTGGTTACAAGAAGG 651
Query 599 CTCACCGTCAATCTTTCACTCGATCAAACTGCAAAATCCTGACTTATGCCGGTGAATTCA 658
|||| |||||||||||||||||||||||||||||||| | |||| |||||||||||| |
Sbjct 652 CTCATCGTCAATCTTTCACTCGATCAAACTGCAAAATATTAACTTTTGCCGGTGAATTTA 711
Query 659 GACAAAAATCTTTCAGGGGAACATCTTTGGATAGAGAAGAGTTACTACAACCAAGACTAC 718
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 712 GACAAAAATCTTTCAGGGGAACATCTTTGGATAGAGAAGAGCTGCTACAACCAAGACTAC 771
Query 719 TTGCAAATGCAGACAGTTTATTCATCATGATCCAAGGCTTATATGTCCATTACAAGCAGT 778
||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 772 TTGCAAATGCAGACAGTTTATTCATCAAGATTCAAGGCTTATATGTCCATTACAAGCAGC 831
Query 779 GTACCTCACCGTCTGTATCTTCCTTCGTTATTGTAAGCGATTCTGCAGCGGATATGAATG 838
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 832 GTACCTCACCGTCTGTATCTTCCTTCGTTATTATAAGCGATTCTGCAGCGGAGATGAATG 891
Query 839 CGAGAAGATCAAGACTGTTAGACAAGCAAATGTCAAACTTAATCTCCCAAACTCACAGCA 898
|||||||||||||||| ||||||||||| ||||||||||||| |||||||||||| | ||
Sbjct 892 CGAGAAGATCAAGACTATTAGACAAGCAGATGTCAAACTTAACCTCCCAAACTCAGAACA 951
Query 899 GTCATCTCCATCGTAGCTACACTATTCAGCCCGATAGATCATCGCTATATGATCCTTTGT 958
||||| | ||||| |||||||||||||||||||||||||||||| ||||||||||| | |
Sbjct 952 GTCATTTTCATCGAAGCTACACTATTCAGCCCGATAGATCATCGTTATATGATCCTCTCT 1011
Query 959 TAGCCAGTTACCAA-ACTACACCCATGAGCTTGTTCAATAAGGATGATGTGAATCACATA 1017
|||| ||| || || ||||||||||| |||||||| ||||||||| ||||||||| |||
Sbjct 1012 TAGCTAGTCAC-AACACTACACCCATTAGCTTGTTTGATAAGGATGGTGTGAATCAAATA 1070
Query 1018 AATTCTATGAATC-CTGGTGATGATTTGCAGAAAG-ATGGGAATACTAGTATAGTTCTAG 1075
|||||||| || | | || || ||| || | |||| ||| ||||||| ||||||||||||
Sbjct 1071 AATTCTATCAAACTCGGG-GACGATATGGA-AAAGGATGAGAATACTGGTATAGTTCTAG 1128
Query 1076 TTCATGGATTTGGTGGAGGAGTCTTCTCATGGAGGCATGTAATGGGAGAATTGTCTCTTC 1135
| ||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1129 TCCATGGATTTGGAGGAGGAGTTTTCTCATGGAGGCATGTAATGGGAGAGTTGTCTCTTC 1188
Query 1136 AGCTCGGTTGCAGAGTCGTTGCATATGACCGGCCTGGTTGGGGATTAACCTCTAGGCTTA 1195
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1189 AGCTCGGTTGCAGAGTCGTTGCTTATGACCGGCCTGGTTGGGGATTAACCTCTAGACTTA 1248
Query 1196 TCAGGAAAGATTGGGAGAAGAGAAATCTAGCTAACCCTTACAAGCTTGAAAGCCAGGTTG 1255
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1249 TCCGGAAAGATTGGGAGAAGAGAAATCTAGCTAACCCTTACAAGCTTGAAAGCCAAGTTG 1308
Query 1256 ATCTACTACTTTCATTTTGTTCTGAGATGGGGTTTTCTTCGGTGATACTCGTTGGCCACG 1315
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1309 ATCTACTACTTTCATTTTGTTCTGAGATGGGGTTTTCTTCGGTGATACTCGTTGGCCATG 1368
Query 1316 ACGATGGTGGTTTGCTTGCTCTCAAGGCCG-TCGAAAGAATACAAGCATCTACCTCTAAA 1374
||||||||||||| |||||||||||||||| | |||||||| |||||||||||||| |||
Sbjct 1369 ACGATGGTGGTTTACTTGCTCTCAAGGCCGCT-GAAAGAATGCAAGCATCTACCTCGAAA 1427
Query 1375 TACAATATCACAATCAAAGGGGTGGTTTTGATAAACGTTAGCTTATCTAGAGAAGTAGTT 1434
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1428 CACAATATCACAATCAAAGGGGTGGTTTTGATAAACGTTAGCTTATCAAGAGAAGTAGTT 1487
Query 1435 CCTGCCTTTGCAAGGATACTTCTTCATACTACACTCAGGAAGAAGCACTTGGTCCGTCCT 1494
|||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||
Sbjct 1488 CCTGCCTTTGCAAGGATACTACTTCATACTTCACTTAGGAAGAAGCACTTGGTCCGTCCT 1547
Query 1495 TTACTGCGAACCGAGATAACCCAATTGGTGAACCGGCGTGCATGGTGTGACACCACCAAG 1554
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1548 TTATTGCGAACCGAGATTACCCAATTGGTGAACCGGCGTGCATGGTGTGACACCACCAAG 1607
Query 1555 CTAACCACTGATGTCACTATGCTCTATAAGGCTCCTCTGTGTTTAGAAGCTTGGGATGAA 1614
||||| |||||| |||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct 1608 CTAACTACTGATATCACAATGCTGTACAAGGCTCCTCTGTGTTTAGAAGCTTGGGATGAA 1667
Query 1615 GCACTCAATGAGATAAGCAAGTTATCATATGAGATGATACTTTCACCTCAAAATGCATCA 1674
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1668 GCACTCAATGAGATAAGCAAGTTATCATATGAGATGATACTTTCACCTCAAAACGCATCA 1727
Query 1675 GCTCT-GTTAAAATCAATAGGAGATCTTCCTGTTTTAGTTGTTGCCGGAGCTGAGGATGC 1733
||||| || |||||| |||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1728 GCTCTTGT-AAAATCCATAGGAGATCTTCCAGTTTTAGTTGTTGCCGGAGCTGAAGATGC 1786
Query 1734 TCTTGTTCCTTTGAAATCTTCACAAGTTCTGGCTTCAAAACTCACTAATTCTAGACTCA- 1792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1787 TCTTGTTCCTTTGAAATCTTCACAAGTTCTGGCTTCAAAACTCACTAATTCTAGACT-AG 1845
Query 1793 TAGAGATCGCTGGTTGCGGCCATCTGCCACATGAGGAGTGTCCTACAACACTTGTTTCCG 1852
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1846 TAGAGATCTCTGGTTGCGGCCATCTGCCACACGAGGAGTGTCCTACAACACTTGTTTCCG 1905
Query 1853 CTCTCGGTTCCTTCATTTGCAGACTGATACCAAAACTACTAGACTCCTAA 1902
||||||| ||||||||||||||||||||||| ||||||| | ||||||||
Sbjct 1906 CTCTCGGCTCCTTCATTTGCAGACTGATACCTAAACTACCAAACTCCTAA 1955
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94176222420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5