BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314636
Length=2280
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53110.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 1735 0.0
AT1G53120.1 | Symbols: | RNA-binding S4 domain-containing prot... 885 0.0
AT3G15340.1 | Symbols: PPI2 | proton pump interactor 2 | chr3:5... 185 1e-45
AT1G53130.1 | Symbols: GRI | Stigma-specific Stig1 family prote... 167 5e-40
> AT1G53110.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: proton pump interactor 2 (TAIR:AT3G15340.1); Has 9980
Blast hits to 7312 proteins in 825 species: Archae - 146;
Bacteria - 1301; Metazoa - 3338; Fungi - 830; Plants - 588;
Viruses - 42; Other Eukaryotes - 3735 (source: NCBI BLink).
| chr1:19790189-19792489 FORWARD LENGTH=2038
Length=2038
Score = 1735 bits (939), Expect = 0.0
Identities = 1182/1295 (91%), Gaps = 33/1295 (3%)
Strand=Plus/Plus
Query 5 GTGCGTCG-ATT-TTACTCGGGAAGTTAAACGGCGATGAATCATCTACGGTGACCACCGA 62
|||||||| ||| | || |||||| |||||||| ||||||||||| ||||||||||||||
Sbjct 282 GTGCGTCGAATTCTAAC-CGGGAAATTAAACGGTGATGAATCATCGACGGTGACCACCGA 340
Query 63 GGAAGACGAAGAAGCTGTGTTTTCCGGTGAAGAGTGGTCTGGGGAGA-ATCTTTATTGTT 121
||||||||| |||||||||||||||||||||||||||| ||| |||| || ||| ||||
Sbjct 341 GGAAGACGACGAAGCTGTGTTTTCCGGTGAAGAGTGGTGTGGAGAGAGTTC-TTACTGTT 399
Query 122 TTTACTTCGTGAAGCAATTCGCTTACGACGACCCTGAGATT-AAGACCAAGATTGATGAA 180
|||||||||| ||||||||||||||||| |||||||||||| ||| ||||||||||||||
Sbjct 400 TTTACTTCGTTAAGCAATTCGCTTACGATGACCCTGAGATTAAAG-CCAAGATTGATGAA 458
Query 181 GCTGATAATGAGATTTATCATTGTAACACTAACCGGATTCACATTGCTAACAGATTAAAA 240
|||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 459 GCTGATCATGAGGTTTATCATTGTAACACTGACCGGATTCACATTGCTAACAGATTGAAA 518
Query 241 TCCAAAAGGGCTGAGAGATTGTCTCTGGTTGCTTCAATGGAGAATTTGAGTTCA-TCACT 299
||||||||||||| |||||||||||||||||| |||||||||| ||||| | | | |
Sbjct 519 TCCAAAAGGGCTGCGAGATTGTCTCTGGTTGCCTCAATGGAGACTTTGA--TGAGT-A-- 573
Query 300 TGATGAATACAATGCTGTAGGGAAGGAACAAGAAGTGGTTACAAAGAGAATTTACAGCTT 359
||| |||| |||| |||| ||||||||||||||| |||| | ||| |||||||| ||
Sbjct 574 TGA-AAATA-AATGAAGTAGAGAAGGAACAAGAAGTAGTTAGAGGGAGGATTTACAGGTT 631
Query 360 GA-GTGAAAGATTAAGTGACATTAAGATGGAGATTGAGTTGTTGGATGTTCAAATGGCTT 418
| ||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 632 -AGGTGAACGATTAAGTGAGATTAAGATGGAAATTGAGTTGTTGGATGTTCAAATGGCTT 690
Query 419 GTGTACTTGATCAAAGAGACAAAGCCGTCGAAAGGATTAAGTTCTTGAGGATACAACGAG 478
|||||||| |||||||||| ||||| || ||||||||||||||||||||||| |||||||
Sbjct 691 GTGTACTTAATCAAAGAGATAAAGCTGTTGAAAGGATTAAGTTCTTGAGGATGCAACGAG 750
Query 479 ACAAAGGGAATGCTGCCTTTTACCGGAGTCGTGTTGTCATGAAGAAAGCTATAGAGTTGG 538
| |||||||||||||| ||||||| ||| |||||||| ||||||||||||||||| ||||
Sbjct 751 ATAAAGGGAATGCTGCATTTTACCAGAGCCGTGTTGTTATGAAGAAAGCTATAGAATTGG 810
Query 539 CTGCTTCTGGAAATGTTAGAGATCTTGAAGAGCTCGCTGATTTTGAGGTTGA-AAATTTT 597
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||
Sbjct 811 CTGCTTCTGGAAATGTTAGAGATCTTGAAGAGCTCGCTGATTCCGAGGTTGAGAAA-TTT 869
Query 598 ATGTCTCGTTGGAACAATGACAAGGCTTTTAGGGA-AGATTACAAGAAAAGAATCTTGCC 656
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 870 ATGTCTCGTTGGAACAATGACAAGGCTTTTAGGGATA-ATTACAAGAAAAGAATCTTGCC 928
Query 657 TTCACTTAATGAGCGAAAGCTGAGGCGCGATGTGCAGATTAGGGACCTAGAAGGCGATAT 716
|||| |||| ||||||||||||||| ||||||||||||||||||||||||||||| || |
Sbjct 929 TTCAGTTAACGAGCGAAAGCTGAGGTGCGATGTGCAGATTAGGGACCTAGAAGGCAATCT 988
Query 717 AGATACTGAGAATGGAAATGAAACAGTGGGGAAAAATGCAATAGAATTCAAGAGGTTTAG 776
||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||
Sbjct 989 AGATACTGAGAATGGAAATGAAACAGTGGTGAAAAAAGCAATAGAATACAAGAGGTTTAG 1048
Query 777 TACTGAGGAGAAGAGTGATGATGTTATGGATTTTGATATACCGGTGTATgaaaagcttgg 836
|||||||||| || || | || || ||||||||||| ||||||||||| ||||||||
Sbjct 1049 TACTGAGGAG--GA--GA-G-TG--AT-GATTTTGATATCCCGGTGTATGAGAAGCTTGG 1099
Query 837 aaaggaggaagaagagattgatgaagaaactttgaaggagaagaaacgggaagAGCAGTT 896
|||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1100 AAAGGAGGAAAAAGAGATTGATGAAGAAACGTTGAAGGAGAAGAAACGAGAAGAGCAGTT 1159
Query 897 AGAGAAAGCTCGACTAGCGATGGAAAGGAAGAGGAAACTACATGAGAAAGCTGCTGCTAA 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1160 AGAGAAAGCTCGACTAGCGATGGAAAGGAAGAGGAAACTACATGAGAAAGCTGCTGCTAA 1219
Query 957 AGCTGTCATaagagttaagaaggaagctgagaagaaacttaaggagcttgagaagagagc 1016
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 1220 AGCTGTCATAAGAGTTAAGAAGGAAGCTGAGAAGAAACGTAAGGAGCTTGATAAGAGAGC 1279
Query 1017 gaagaagaagaagaagGCTGCATTTAACTCTTCTTCTATGAATGTAGACAGAACAACTGA 1076
||||||||||||| | ||| || ||| ||||||||| || |||||||||||||||| ||
Sbjct 1280 GAAGAAGAAGAAG--G-CTGTATGTAAATCTTCTTCTGTGGATGTAGACAGAACAACAGA 1336
Query 1077 GACAGTCACCGAGGCATCAGAACCAGAAAAGGAGAAGCTATTAAATGGGAGATCAGTGTT 1136
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1337 GACAGTCAGCGAGGCATCAAAACCAGAAAAGGAGAAGCTATTAAATGGGAGATCAGTGTT 1396
Query 1137 TCCAAAACAGAGAAGTTTTTGTTATAGACATCACGGAAAAGGAAATGACGCTGTCCTCAA 1196
||||||||||||||||| | ||||||| |||||||||||||||||||||||||||| ||
Sbjct 1397 TCCAAAACAGAGAAGTTATAATTATAGATATCACGGAAAAGGAAATGACGCTGTCCTTAA 1456
Query 1197 AGCCATCATAAAGCGTAGAAAAGCTTATAGGTTATGGGTTTGGACTGTTTCCTCCTCTGC 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1457 AGCCATCATAAAGCGTAGAAAAGCTTATAGGTTATGGGTTTGGACTGTTTCCTCCGCTGC 1516
Query 1257 AATTGTTCTCTCACTCACTCTCCTCGTTATATTCT 1291
| ||| |||| ||||| ||||||||||| | ||||
Sbjct 1517 AGTTGCTCTCCCACTCGCTCTCCTCGTTGTCTTCT 1551
> AT1G53120.1 | Symbols: | RNA-binding S4 domain-containing protein
| chr1:19792757-19794778 FORWARD LENGTH=1177
Length=1177
Score = 885 bits (479), Expect = 0.0
Identities = 551/586 (94%), Gaps = 3/586 (1%)
Strand=Plus/Plus
Query 1297 AGACGAGAACAGGCAGCTATGGCTGTCAGAAGCTTGGCTCCTCCATGGATCATCTTGCGA 1356
||||||||||| | ||||||||||||| ||||||||||||||||||| |||||||| ||
Sbjct 27 AGACGAGAACA-G--GCTATGGCTGTCACAAGCTTGGCTCCTCCATGGGTCATCTTGAGA 83
Query 1357 CAAACTTTCCGGTCAGTCGCAGCATCTTCTTACCTTCACTCAAATCAAAAAACCCTAATC 1416
| | ||||||||||||| ||||| ||||||| || ||| ||||||||||||||||||||
Sbjct 84 CTAGCTTTCCGGTCAGTAGCAGCTTCTTCTTGTCTCCACACAAATCAAAAAACCCTAATC 143
Query 1417 TCAAATCTCTCTATTCCCGCTTCGTTTCCTCTCCGACATTCAGCTTTGAGAAGATGTTAC 1476
| |||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 144 ACGAATCTCTCCATTCCCACTTCGTTTCCTCTCCGACAGTCAGCTTTGAGAAGATGTTAC 203
Query 1477 ATTGCAGAAGCTATAAAAGGAGATGTAGATTTTCTACTCAAAGGAGTTGGAGACCAAGCT 1536
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 204 AGTGCAGAAGCTATAAAAGGAGATGTAGATTTTCTCCTCAAAGGAGTTGGAGACCAAGCT 263
Query 1537 GTTGCCAAAGAAGTCAAGCAAATTCTTGAAATGGCGAGACGGGCAGCATCAAAAAGAGAA 1596
||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||
Sbjct 264 GTTGCCAAAGAAGTCAAGCAAATTCTTGAAATGGCAAGACGTGCATCATCAAAAAGAGAA 323
Query 1597 GTTCTTCATACAGATTTTCTCACACCACCTATTGTTAAGGAATCAGTTTCAGTATTGGAA 1656
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 324 GTTCTTCATACAGATTTTCTCACACCACCTATTGTTAAGGAATCAGTTTCACTATTGGAA 383
Query 1657 AAATTTGCTGATGTTAAGATAGTTACTCAAGGAGGTTACCCTGAGGCTGAGCGGTGTAGG 1716
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 384 AAATTTGCTGATGTTAAGATAGTTGCTCAAGGAGGTTACCCTGAGGCTGAACGGTGTAGG 443
Query 1717 ATCTCGATTGGACATCCTGATGTTCTAACTAATGATCCAGATATAGTTGCTGCTTTGAGT 1776
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 444 ATCTCGATTGGACATCCTGATGTCCTAACTAGTGATCCAGATATAGTTGCTGCTTTGAGT 503
Query 1777 ATCACAGGGAATTTCGGGTTTCAACCATGTTCTCATGGTGACTTCCTTGGTGCGATTCTT 1836
|||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||
Sbjct 504 ATCACAGGGAATTTCGGGTTTCAACCTTGTTCTCACGGTGACTTCCTTGGTGCTATTCTT 563
Query 1837 GGCACGGGAATTTCCAGGGAGAAACTTGGTGATATTTTAATTCAGG 1882
|||||||||||||||||||| |||||||| ||||| ||||||||||
Sbjct 564 GGCACGGGAATTTCCAGGGAAAAACTTGGAGATATCTTAATTCAGG 609
Score = 472 bits (255), Expect = 9e-132
Identities = 289/306 (94%), Gaps = 0/306 (0%)
Strand=Plus/Plus
Query 1880 AGGTTGGAAACGTTGGTGTAATTTGTACTAAGATACCTTTGCTTGCTCTTGAATACGAAC 1939
|||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 676 AGGTTGGAAATGTTGGTGTAACTTGTAGTAAGATACCTTTGCTTGCTCTTGAATACGAAC 735
Query 1940 CACCTAGGACTAATTCCTTTAAAACCGTGGAAGCCTCGTTGAGAATTGATGCAGTAGCTA 1999
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 736 CGCCTAGGACTAATTCCTTTAAAACCGTGGAGGCCTCGTTGAGAATTGATGCAGTAGCTA 795
Query 2000 GTGCTGGTTTCAAGATTTCGCGGTCAAAGCTAGTTGATTTGATTAGTAACAAGGACGTTC 2059
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 796 GTGCTGGTTTCAAGATTTCGCGGTCAAAGCTAGTTGATTTGATTAGTAGCAAGGATGTTC 855
Query 2060 GGGTTAACTGGGCAACCGTTACCAAGAACGGAACCACGGTGAAGACCGGTGATGTTGTCT 2119
|||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||
Sbjct 856 GGGTTAACTGGGCAACCGTTACAAAGAACGGAACCATAGTGAAGACTGGTGATGTTGTCT 915
Query 2120 CCGTTAGCGGAAAAGGGAGGCTTAAGATTGGAGAAATCAATGAAACGAAGAAAGGGAAAT 2179
|||||||||| |||||||| || ||||||||||| |||||||||||||||||||| ||||
Sbjct 916 CCGTTAGCGGGAAAGGGAGACTCAAGATTGGAGAGATCAATGAAACGAAGAAAGGTAAAT 975
Query 2180 ATGCAG 2185
|||||
Sbjct 976 TTGCAG 981
> AT3G15340.1 | Symbols: PPI2 | proton pump interactor 2 | chr3:5159698-5162841
REVERSE LENGTH=2293
Length=2293
Score = 185 bits (100), Expect = 1e-45
Identities = 199/246 (81%), Gaps = 10/246 (4%)
Strand=Plus/Plus
Query 422 TACTTGATCAAAGAGACAAAGCCGT-CGAAAGGATTAAGTTCTTGAGGATACAACGAGAC 480
||||||| |||| |||| | || | |||||||||||| | ||||| ||||||||||||
Sbjct 993 TACTTGAGGAAAGGGACAGATCC-TATGAAAGGATTAAGATGTTGAGAATACAACGAGAC 1051
Query 481 AAAGGGAATGCTGCCTTTTACCGGAGTCGTGTTGTCATGAAGAAAGCTATAGAGTTGGCT 540
|||||||| ||||||||||||| ||| | | ||| |||| |||||||| ||| ||||||
Sbjct 1052 AAAGGGAAAGCTGCCTTTTACCAGAGCCTTCCTGTTATGAGGAAAGCTAGAGAATTGGCT 1111
Query 541 GCTTCTGGAAATGTTAGAGATCTTGAAGAGCTCGCT-GATTTTGAGGTTGAAA-ATTTTA 598
|||||||||||||||||||||||||||| | | || | | |||| ||| | ||| |
Sbjct 1112 GCTTCTGGAAATGTTAGAGATCTTGAAGTGTTTGCCAGCTCC-GAGGCTGATAGATTC-A 1169
Query 599 TGTCTCGTTGGAACAATGACAAGGCTTTTAGGGAAGATTACA-AGAAAAGAATCT-TGCC 656
|| ||| ||||| ||||||||||||||||||| |||||| | |||||||| | | ||
Sbjct 1170 TGACTCAATGGAATGATGACAAGGCTTTTAGGGATGATTACGTA-AAAAGAATATCT-CC 1227
Query 657 TTCACT 662
||||||
Sbjct 1228 TTCACT 1233
> AT1G53130.1 | Symbols: GRI | Stigma-specific Stig1 family protein
| chr1:19794723-19795544 REVERSE LENGTH=822
Length=822
Score = 167 bits (90), Expect = 5e-40
Identities = 94/96 (98%), Gaps = 0/96 (0%)
Strand=Plus/Minus
Query 2185 GCTCGTCCCTTTATTCGCTTTTACGCCATTGCAAATGTTGTAGCTCGCGACGTGACATCT 2244
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 391 GCTCGTCCCTTTATTCGCTTTTACGCCATTGCAAATGTTGTAACTCTCGACGTGACATCT 332
Query 2245 CATTCCTTTCTTGATCTTCTTGTAGTGGGAAACTAG 2280
||||||||||||||||||||||||||||||||||||
Sbjct 331 CATTCCTTTCTTGATCTTCTTGTAGTGGGAAACTAG 296
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 113152028430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5