BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314643
Length=1533
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53190.1 | Symbols: | RING/U-box superfamily protein | chr1... 2531 0.0
AT3G15070.1 | Symbols: | RING/U-box superfamily protein | chr3... 217 3e-55
> AT1G53190.1 | Symbols: | RING/U-box superfamily protein | chr1:19837110-19840227
FORWARD LENGTH=1965
Length=1965
Score = 2531 bits (1370), Expect = 0.0
Identities = 1462/1508 (97%), Gaps = 0/1508 (0%)
Strand=Plus/Plus
Query 26 AGAGGGGTTCTGCAGCAAGCGAAATGGGACAAAGAAATAGGACTGTTGATTTAGAAATGG 85
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 234 AGAGGGCTTCTGCAGCAAGCGAAATGGGACAAAGAAATAGGAATGTTGATTTAGAAATGG 293
Query 86 AGCAGCAGCAATCTCAAGCTTCTCTCCAACCAGAACCTTGCATCCTTTTAGGCAGCTTTC 145
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 294 AGCAGCAGCAATCTCAAGCTTCTCTCCAAGCAGAGCCTTGCATCCTTTTAGGCAGCTTTC 353
Query 146 CGCAACAACCGGATAATAATAATATCCCTGCCATGGTTGCACACATTCCTAATTTAGAAG 205
||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||
Sbjct 354 CGCAACAACCGGATAATAATAATATGCCTGCTATGGTTGCACACGTTCCTAATTTAGAAC 413
Query 206 CTCATTCTCTTCAAGACCCAACATATGACAACTCGGCAATGTTCTACGGGCTTCCTCAGT 265
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 414 CTCATTCTCTTCAAGACCCAACTTATGACAACTCGGCCATGTTCTACGGGCTTCCTCAGT 473
Query 266 ACCATCATCATCCTCATCAGCGTGCTCCAACGAATTTCTATGTTCCCTATGTGGCATTTC 325
| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 474 ATCATCATCATCCTCACCAGCGTGTTCCAACGAATTTCTATGTTCCCTATGTGGCATTTC 533
Query 326 AGGCTCCTCCGGGTCAGTTACCATCTTCAAGCAGTCACGGTGTGGTTGGAGTAAGTCCTG 385
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 534 AGGCTCCTCCGGGTCAGTTACCATCTTCAAGCAGTCACGGTGTAGTTGGTGTAAGTCCTG 593
Query 386 ATCATGAATACGAAAGAAATGCTCATTTTATGGATCACACAAGAGGGACATATAAACGAA 445
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 594 ATCATGAATACGAAAGAAATGCTCATTTTATGGATCACACAAGAGGGACATACAAGCGAA 653
Query 446 AAAACGCTGAAGGAATACCCGGACAACCTCAATATTTAAGTACCTTAGCAGCCCCATTCA 505
| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 654 AGAACGCTGAAGGAATACCCGGACAACCTCAATATTTAAGTACCTTAGCAGCTCCATTTA 713
Query 506 ACACACCGGAGACAATAGCACCTTTTGTAGGCGCTAGGAACAGACCAGGAGCTGTTACAG 565
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 714 ACACACCGGAGACAATAGCCCCTTTTGGAGGCGCTAGGAACAGACCAGGAGCTGTTACAG 773
Query 566 TGAACCCTGTTCTTCCTCCTCATGCTCCAAACAACTTCATTCAAGGAAACTATGCAGGTC 625
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 TGAACACTGTTCTTCCTTCTCATGCTCCAAACAACTTCATTCAAGGAAACTATGCAGGTC 833
Query 626 ATCATCCTTTTCCACCTCCTGGATCAATCTGGTATGATCAACACCACGGCAGATCTGATG 685
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 834 ATCATCCTTTTCCACCTCCTGGCTCAATGTGGTATGATCAACACCACGGCAGATCTGATG 893
Query 686 GCTCACCTTCGTTCTGGCCCACACCTTACATGCACGGTAGTAACATTGTCGCTGGTTCCA 745
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 894 GCTCACCTTCGTTCTGGCCCACACCTTACATGCACGGTAGTAACATTTTCGCTGGTTCCA 953
Query 746 TAGAGTCTAGTAGCAGAAACCCTACATCATTTATGTATCCTTCTCAGTTAAACCCGAGGG 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 TAGAGTCTAGTAGCAGAAACCCTACATCATTTATGTATCCTTCTCAGTTAAACCCGAGGG 1013
Query 806 ACCACTATTATAGTCATCATCACCACCCGGCACCTCCTCCTGTACAAGGCATGAGAGGCC 865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 ACCACTATTATAGTCATCATCACCACCCGGCACCTCCTCCTGTACAAGGCATGAGAGGCC 1073
Query 866 AGAATGCCACATTATATCCTCACACAGCTTCTTCGGCTTCATACAGAGTTCCTCCAGGGA 925
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1074 AGAATGCCACATTATATCCCCACACAGCTTCTTCTGCTTCATACAGAGTTCCTCCAGGGA 1133
Query 926 GTTTTGCTCCGCAGAACACAATGAATAGTGGTCCCTCGGGCTCAGAGATGGGTTCGAGTC 985
||||| |||| ||||||||||||||||||||||||| ||| ||||||||||| |||||||
Sbjct 1134 GTTTTACTCCTCAGAACACAATGAATAGTGGTCCCTTGGGGTCAGAGATGGGCTCGAGTC 1193
Query 986 ACATGGGTCTGGTTCAACCAACCGGGTTTCGGATATACCAGCATCATCAGCGAGATGATT 1045
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 ACATGGGTCCGGTTCAACCAACCGGGTTTCGGATATACCAGCATCATCAGCGAGATGATT 1253
Query 1046 CTGTACCTGTAGCAACTCTTAGACAACACCGTGGAGGAGTTCCTCGGCTTAGAGTGATGC 1105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 CTGTACCTGTAGCAACTCTTAGACAACACCGTGGAGGAGTTCCTCGGCTTAGAGTGATGC 1313
Query 1106 CTGATGATGAAGTTGCACTTTTGGAGTTTGGAGACTTCCTTGGTGGTTCTGGAAATAATC 1165
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 CTGATGATGAAGTTGCGCTTTTGGAGTTTGGAGACTTCCTTGGTGGTTCTGGAAATAATC 1373
Query 1166 ACATTGATCATCATCGAGATATGCGATTGGACATCGAGGAAATGTCTTACGAGGAGCTTC 1225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1374 ACATTGATCATCATCGAGATATGCGATTGGACATCGAGGAAATGTCTTACGAGGAGCTTC 1433
Query 1226 TTGCTTTGAGTGAGCGAATCGGAACAGTAAACACTGGTTTGCCAGAGGAAGATGTTAAGA 1285
||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1434 TTGCTTTGAGTGAGCGAATTGGAACAGTAAACACTGGGTTGCCGGAGGAAGATGTTAAGA 1493
Query 1286 ATCATTTGAAAACAAGAACATGTTCTGGAATCAACCTTGAAAAAGAGTCGTCGTCTCCAC 1345
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 1494 ATCATTTGAAAACAAGAACATGTTCTGGAATCAACTTTGAAAAAGAGTCGTCGTCCCCAC 1553
Query 1346 GAACTAAAGATTTAGAAACTGAACCGTGCACGATATGTCAGGAAAGCTTCATGAACGAAG 1405
||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||
Sbjct 1554 GAACTAAAGATTTAGAAACCGAACCGTGCACTATATGTCAGGAAAGCTTCAAGAACGAAG 1613
Query 1406 AAAAGATTGCAACTTTGGATTGCGGGCACGAGTATCATGCAGAGTGCTTGGAGAAATGGC 1465
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1614 AAAAGATTGCGACTTTGGATTGCGGGCACGAGTATCATGCAGAGTGCTTGGAGAAATGGC 1673
Query 1466 TGATTGTGAAGAACGTTTGCCCAATCTGTAAATCAGAAGCACTGGTCATGGAGAAGAGAA 1525
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1674 TGATTGTGAAGAACGTTTGCCCAATCTGTAAATCAGAGGCACTGGTCATGGAGAAGAGAA 1733
Query 1526 AGGTATAG 1533
||||||||
Sbjct 1734 AGGTATAG 1741
> AT3G15070.1 | Symbols: | RING/U-box superfamily protein | chr3:5070134-5073317
REVERSE LENGTH=1965
Length=1965
Score = 217 bits (117), Expect = 3e-55
Identities = 419/557 (75%), Gaps = 52/557 (9%)
Strand=Plus/Plus
Query 982 AGTCACATGGGTCTGGTTCAACCAACCGGGTTTC-GGATATACCAGCATCAT-CAGCGAG 1039
||||| ||||| | ||||||| ||||| || ||| ||||| |||| || || | | |||
Sbjct 1085 AGTCATATGGGACAGGTTCAATCAACC-GGATTCAGGATAAACCA--AT-ATCCCG-GAG 1139
Query 1040 ATGATTCTGTACCTGTAGCAACTCTTAGACAACACCGTGGAGGAGTT-CCTCGGC-TTAG 1097
| |||| |||||||| ||||| || || | ||||||| || | || |||| | ||||
Sbjct 1140 AAGATTTTGTACCTGCAGCAATTC-TA-A-GACACCGT-GA--A-TTGCCTC-ACTTTAG 1191
Query 1098 AGTGATGCCTGATG-ATGAAGTTGCACTTTT-GG-AGTTTGGAGACTTCCTTGGTGGTTC 1154
|| ||||| | | ||||| |||| |||| || || | |||||||| | | | |
Sbjct 1192 AGCAATGCCCG-CGAATGAAAATGCA-TTTTGGGAAG-TAGGAGACTT-C-T-ACAATGC 1245
Query 1155 TGGAAATAATCACATTGATCATCATCGAGATATGCGATTGGACATCGAGGAAATGTCTTA 1214
| | |||| | | |||||||||| ||| ||||| || ||||| || || ||||| ||
Sbjct 1246 T-G--TTAATTATGTCGATCATCATCAAGACATGCGCTTAGACATAGAAGATATGTCATA 1302
Query 1215 CGAGGAGCTTCTTGCTTTGAGTGAGCGA-ATCGGAACAGTAAACACTGGTTTGCCA-GAG 1272
|||||||||||||||||||| || | | || ||||| || || || || ||| || |
Sbjct 1303 TGAGGAGCTTCTTGCTTTGAGCGA-CCAGATTGGAACTGTGAAGACAGGCTTGTCATCA- 1360
Query 1273 GAAGATGTT-AAGAATCATT-TGAAAACAAGAACAT-GTTCTGGAATCAACCTTGAAAAA 1329
||||||||| ||||| | || |||||| |||||| | | | |||| ||||| ||| ||
Sbjct 1361 GAAGATGTTAAAGAA-C-TTCTGAAAAGAAGAACCTCG-ACCAGAATTAACCTGGAAGAA 1417
Query 1330 GAGTCGTCGTCTCCACGAACTAAAGATTTAGAAACTGAACCGTGCACGATATGTCAGGAA 1389
| ||| | ||| ||| ||| |||| ||||| | ||||||||||| ||||||
Sbjct 1418 G-GTC--CATCT------ACT---GATCTAGAGACTGATTCTTGCACGATATGCCAGGAA 1465
Query 1390 AGCTTCATGAACGAAGAAAAGATTGCAACTTTGGATTGCGGGCACGAGTATCATGCAGAG 1449
| || || ||||||||| ||||| ||||| |||||||| |||| | || ||||||||
Sbjct 1466 AACTACAAGAACGAAGATAAGATCGCAACGCTGGATTGCATGCACAAATACCATGCAGAA 1525
Query 1450 TGCTTGGAGAAATGGCTGATTGTGAAGAACGTTTGCCCAATCTGTAAATCAGAAGCACTG 1509
|||||| |||| ||| || || | ||||||||||||||||||||||||||||| ||| ||
Sbjct 1526 TGCTTGAAGAAGTGGTTGGTTATCAAGAACGTTTGCCCAATCTGTAAATCAGAGGCATTG 1585
Query 1510 GTCATGGAGAAGA-GAA 1525
||||| ||||||| |||
Sbjct 1586 GTCATAGAGAAGAAGAA 1602
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75652221315
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5