BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314644
Length=1839
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53200.1 | Symbols: | unknown protein; Has 21 Blast hits to... 1609 0.0
> AT1G53200.1 | Symbols: | unknown protein; Has 21 Blast hits
to 21 proteins in 9 species: Archae - 0; Bacteria - 2; Metazoa
- 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr1:19840376-19843403 REVERSE
LENGTH=2186
Length=2186
Score = 1609 bits (871), Expect = 0.0
Identities = 1023/1096 (93%), Gaps = 11/1096 (1%)
Strand=Plus/Plus
Query 7 GAAACCGAAGAGAAATCTGAAAAGCTTGAGGAGACTAAAGCTAAGCGTCGTCGAGTGAAT 66
||||||||||||||| |||| ||||||||| ||| |||||||||||||||||| |||| |
Sbjct 283 GAAACCGAAGAGAAAACTGATAAGCTTGAGAAGATTAAAGCTAAGCGTCGTCGCGTGAGT 342
Query 67 AGCTCAGATATAGTCTCAGATACACACAAGTACAAGAGAATTCAGCGCTGCATAGCGAAA 126
|||||||| || | ||| |||||||| ||||||||||||||||| ||||||| |||||||
Sbjct 343 AGCTCAGAAATCGACTCTGATACACAAAAGTACAAGAGAATTCAACGCTGCAGAGCGAAA 402
Query 127 CCATCTTATCTTCTGA-GTCTTGGGCCAAAGTCAAGCCGAAGTGAGTATCTCAATAGATT 185
|||||||||||||| | || |||||||||||||||||||||||||||| |||||||||||
Sbjct 403 CCATCTTATCTTCT-ATGTATTGGGCCAAAGTCAAGCCGAAGTGAGTACCTCAATAGATT 461
Query 186 ACCAGGATTACTTCGTGAGCTACTTCGTAAGAGATACTGGAATGATGCAAGTCGTGTACT 245
|||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||| ||
Sbjct 462 ACCAGGATTACTTCGTGAGCTACTTCGTAATAGACACTGGAATGATGCAAGCCGTGTGCT 521
Query 246 TTCAGTTCTGATGAGAGGGACAATTAAAGATCCTTGTCCAAAGATGAATCGTCTCAAATA 305
||| |||||||||| |||||||||||| ||||||||||| ||||||||||| ||||||||
Sbjct 522 TTCTGTTCTGATGAAAGGGACAATTAACGATCCTTGTCCGAAGATGAATCGCCTCAAATA 581
Query 306 CGAGGCTCATATACAAATTGTGAGTCACTTGGAAACTAAGAAAAACAAAGCTGATGAGAT 365
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 582 CGAGGCTCATATACAAATTGTGAGTCACTCGGAAACTAATAAAAACAAAGCTGATGAGAT 641
Query 366 TGGAAGAGTATATGATACTTGGATTGGCCAGATTGGTAAACAACATAAAGAGGAGAGGCT 425
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 642 TGGAAGAATATATGATACTTGGATTGGGCAGATTGGTAAACAACATAAAGAGGAGAGGCT 701
Query 426 CTTGGTTTGGTTCGAGCAAATTTGTCATTTTATTGACCATGAGATGAACAGTGAGGCCTA 485
||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 702 CTTGGTTTGGTACGAGCAAATTTGTCATTTTATTGAGCATGAGATGAACAATGAGGCCTA 761
Query 486 TAGTGCTGTAATCAGCTTGATGCAGAACCGTGATTTCGCAATGCTTCCACGGGCCAATCT 545
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 762 TAGTACTGTAATCAGCTTAATGCAGAACCGTGATTTCGCAATGCTTCCACGGGCCAATCT 821
Query 546 GTTTATAGGAATCACATTCTACAAGATGTGGTGTAGTAAATTCTTGAAGGAGTTGCAGCC 605
||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 822 GTTTATAGGAATCTCATTCTACAAGATGTGGTGTAATAAATTCTTGAAGGAGTTGCAGCC 881
Query 606 TGAAGATGTAGATGACAATGAAAGCGTATCCAACATGTCGGAATCAGGATCTGGTAGTCT 665
|||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 882 TGAAGATGCAGATGACAATGGAAGCGTATCCAACATATCGGAATCAGGATCTGGTAGTCT 941
Query 666 GGTTGAGTGTTCAGGCAGGGATGAGTCGGTGTGCTCTATGGCGTCAGAGGTTTCTGCTAG 725
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 942 GGTTGAGTGTTCAGGCAGGGATGAGTCGGTGTGCTCTTTGGCGTCAGAGGTTTCTGCGAG 1001
Query 726 AAAAGATTCAGAGACTTCAGTCATGAATAATAAAAAAGTTTCCCATTTGTCCATCAGTGA 785
|||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1002 AAAAGATTCAGAGACTTCCGTCATGAAAAATAAAAAAGTTTCCCATTTGTCTATCAGTGA 1061
Query 786 CTCCGAGACAAGGATGGATACGAAGGTAAACTTGAAGAGTACTCCGC-ATTTTACCAC-T 843
||| |||||||||||||||||||||||||| ||| ||||||||| | || |||| || |
Sbjct 1062 CTCGGAGACAAGGATGGATACGAAGGTAAAAGTGATGAGTACTCC-CTATGTTAC-ACCT 1119
Query 844 CCACCACAACTCTATGCGACCTCTGAAGAAAACGAAGCCTCTTTGGGAGATGGG---GTT 900
||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 1120 CCACCACAACTCTATGCGATCTCTGAAGAAAACGAAGCCTCTTTGGGAGATGGAATTGTT 1179
Query 901 GAATTTGATCCCACTGTTATTAATATTCTTGGTGACATGGATCCATGGTTGCTTCC-TTT 959
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1180 GAATTTGATCCCACTGTTATTAATATTCTTGGTGACATGGATCCATGGTTGCTTCCCTTT 1239
Query 960 CAAACCGCCATCAGATCCTGATTGCTACAGAAAGATTGTCGATGATTCGTATTTTAAGGA 1019
||||| ||| |||||| ||||||||||||||||||||| ||||||| |||| ||||||
Sbjct 1240 -AAACCACCAGAAGATCCGGATTGCTACAGAAAGATTGTCAATGATTCTTATTATAAGGA 1298
Query 1020 AGCATTGAAACATATGCGGCAAACTCTTCAGTCCCCGCATCATGTATCTTTGCCTGCATT 1079
|||| ||||| ||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 1299 AGCAGTGAAATATATGCGGCAAACTCTTCAGTCCCCGCCCCATGTATCTTTGGCTGCATT 1358
Query 1080 ACATCCACTTGTACAG 1095
||||||||||||||||
Sbjct 1359 ACATCCACTTGTACAG 1374
Score = 996 bits (539), Expect = 0.0
Identities = 649/703 (92%), Gaps = 4/703 (1%)
Strand=Plus/Plus
Query 1139 TTCTGTTAATTGGAGGTCATGTAGATGAAGCGATGAAAGTGGTCGAGGAGCTGTGCAACA 1198
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1376 TTCTGTTAATCGGAGGTCATGTAGATGAAGCGATGAAAGTGGTCGAGGAGATGTGCAACA 1435
Query 1199 AAGTACATGACATAAAACCTTTCAGGATCAAGGCCCTAATGATGGAGAAATTTCAGAGTA 1258
|| |||||||| |||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1436 AAATACATGACGTAAAACCTTTCAGGATTAAGGCCCTAATGATGGAGAAATTTCATCGTA 1495
Query 1259 ACAGCGACATGCTTGGAAAATGCTATGAAGATATCTTAAAGATCGATCCTTGTTGTGTAA 1318
|||| |||||||| | ||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 1496 ACAGTGACATGCTCGCAAAATGCTATGAAGATATCTTAAAGATTGATCCTTGTTGTATAA 1555
Query 1319 CTACCCTGAAGAAGCTTATTGGAATGTGCATAGAAGATGAGTATAGTAGAGAGTCGCTAA 1378
||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 1556 CTACCCTAAAGAAGCTTATTGGAATGTGCTTAGAAGATGAGTATAGTAGAGAGTCGCTTA 1615
Query 1379 CCGAAATGATAGCATTGCATGTAGAAGGTTCTTTTCCTGAACCCGAAATCTGGAAAGAGT 1438
||||||||||||| ||||||||||||| |||||||||||| || ||||| ||||||||||
Sbjct 1616 CCGAAATGATAGCGTTGCATGTAGAAGCTTCTTTTCCTGAGCCTGAAATTTGGAAAGAGT 1675
Query 1439 TAGCCTCTTGCTTCAGTCACTTCTTTGAGAATCTTGATGAAGACCGATTGTCAGTATGCC 1498
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1676 TAGCCTCTTGCTTCAGTAACTTCTTTGAGAATCTTGATGAAGACCGATTGTCAGTATGCC 1735
Query 1499 TTGACGGATCTGAAGATAAAAAGAATCCACAAACATATTCTGTTCGATACAACCTGACAC 1558
|||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||
Sbjct 1736 TTGACGGATCTGAAGATAAACGGAATCCACAAACGTATTCTGTTCGATACAACCCAACAC 1795
Query 1559 CAAAAATGTTCACCAATACATCATGGACCCTTCGGGCTAAGTGTTGGCTAAACCGCCATT 1618
|||||| ||||||||| ||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1796 CAAAAACGTTCACCAAGACATCATGGACTCTTCGGGCTAAGTGGTGGCTAAACCGCCATT 1855
Query 1619 TCTCCCCGGAAATGCTAGAGACAGAAATAAGAAACAGT-ATAGTGACAGGAGATCGGGAG 1677
|||||||| ||||||||||||||||||||| |||| || | | ||||||||||| |||||
Sbjct 1856 TCTCCCCGCAAATGCTAGAGACAGAAATAAAAAAC-GTTACATTGACAGGAGATTGGGAG 1914
Query 1678 ATGATGACTTACAAAGCGGCATGTGCTAGTCATATCTATGGGCGAGAGTTTGGTTATGTT 1737
||||||||||||||||| || ||||| ||| ||||||| || |||||||| |||||||||
Sbjct 1915 ATGATGACTTACAAAGCCGCTTGTGCAAGTTATATCTACGGACGAGAGTTCGGTTATGTT 1974
Query 1738 ACAAAAGTGTACCAACTGTTGAAGAGTAGCAACAA-CAGAGAGTTTTTCAAATTCTTGCG 1796
|||||||||||| ||||||| ||||||||||| || | |||||||||||||||||||| |
Sbjct 1975 ACAAAAGTGTACGAACTGTTAAAGAGTAGCAATAAGC-GAGAGTTTTTCAAATTCTTGAG 2033
Query 1797 GGAACATAGAATGAATGGGAACAAGATTTACAATTTTGAATAG 1839
||||| ||| |||||||||||||||| |||||||||||||||
Sbjct 2034 AGAACACAGAGTGAATGGGAACAAGATGTACAATTTTGAATAG 2076
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91013588085
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5