BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg314652

Length=249
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G53282.1 | Symbols:  | Plant thionin family protein | chr1:1...   289    1e-77
  AT1G53285.1 | Symbols:  | FUNCTIONS IN: molecular_function unkn...   220    4e-57


> AT1G53282.1 | Symbols:  | Plant thionin family protein | chr1:19867930-19868335 
REVERSE LENGTH=317
Length=317

 Score =  289 bits (156),  Expect = 1e-77
 Identities = 222/252 (88%), Gaps = 12/252 (5%)
 Strand=Plus/Plus

Query  1    ATGAGTATTAAAAAATGTGTTGTATTGATGGTGGTGGTGTTGGTAGTTTTGGTGGCTATG  60
            |||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct  1    ATGAGTCTTAAAAAATGTGTTGTATTGATGGTGGTGGTGTTGGTAGTTATGGTTGCTATG  60

Query  61   GTAGAAGAAGTAGAAGGGCGTTCAACCCCATATGGTAGATGCATGGACCTTTGC-ATGAC  119
            ||||||||||||||||||| ||||      |||| || |||||||||||||||| | |||
Sbjct  61   GTAGAAGAAGTAGAAGGGCTTTCA------TATGCTACATGCATGGACCTTTGCGA-GAC  113

Query  120  CAAGTGCAACCttttttttACACATCCGGAAAAATACTGTAGAGATAAATGTAATCGCAA  179
            |||||| ||| |||||||||||||||| ||||||||||||| |||||||||| | |||||
Sbjct  114  CAAGTGTAACTTTTTTTTTACACATCCAGAAAAATACTGTAAAGATAAATGTGACCGCAA  173

Query  180  ATGTCACAGACTTTA-TCCATCTCAATCATCCCAGATGGA-ATCAATAGGAATGAGAAAC  237
            |||||  |||||| | || | ||||||||||||||||||| | | |||| ||||||||||
Sbjct  174  ATGTCGTAGACTTCAGTC-AGCTCAATCATCCCAGATGGAGA-CTATAGAAATGAGAAAC  231

Query  238  ATAAATGGGTAG  249
            ||||||||||||
Sbjct  232  ATAAATGGGTAG  243


> AT1G53285.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown; 
INVOLVED IN: biological_process unknown; LOCATED IN: 
endomembrane system; BEST Arabidopsis thaliana protein match 
is: Plant thionin family protein (TAIR:AT1G53282.1); Has 35333 
Blast hits to 34131 proteins in 2444 species: Archae - 798; 
Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; 
Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 
| chr1:19869560-19870095 REVERSE LENGTH=439
Length=439

 Score =  220 bits (119),  Expect = 4e-57
 Identities = 201/238 (84%), Gaps = 16/238 (7%)
 Strand=Plus/Plus

Query  10   AAAAAATGTGTTGTATTGATGGTGGTGGTGTTGGTAGTTTTGGTGGCTATGGTAGAAGAA  69
            ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || 
Sbjct  2    AAAAAATGTGTTGTATTGATGGTGGTGGTGTTGGTAGTTATGGTGGCTATGGTAGATGAC  61

Query  70   GTAGAAGGGCGTTCAACCCCATATGGTAGATGCATGGACCTTTGC-ATGACCAAGTGCAA  128
            || ||||||||  |   |  ||||| || ||||||||| |||||| | ||||||||| ||
Sbjct  62   GTTGAAGGGCGG-CTTTC--ATATGCTACATGCATGGATCTTTGCGA-GACCAAGTGTAA  117

Query  129  CCttttttttACACATCCGGAAAAATACTGTAGAGATAAATGTAATCGCAAATGTCACAG  188
            | |||||||||||||||| ||||||||||||| |||||||||||| ||||||||||  ||
Sbjct  118  CTTTTTTTTTACACATCCAGAAAAATACTGTAAAGATAAATGTAACCGCAAATGTCGTAG  177

Query  189  ACTTTATCCATCTCAATCATCCCAGATGGA-ATCAATAGGAATGAGAAACATAAATGG  245
            |||| |   |||  | || ||  || |||| | | |||||||||||||||||||||||
Sbjct  178  ACTTCA---ATC--A-TC-TC--AGGTGGAGA-CTATAGGAATGAGAAACATAAATGG  225



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11310243525


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5