BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg314652 Length=249 Score E Sequences producing significant alignments: (Bits) Value AT1G53282.1 | Symbols: | Plant thionin family protein | chr1:1... 289 1e-77 AT1G53285.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 220 4e-57 > AT1G53282.1 | Symbols: | Plant thionin family protein | chr1:19867930-19868335 REVERSE LENGTH=317 Length=317 Score = 289 bits (156), Expect = 1e-77 Identities = 222/252 (88%), Gaps = 12/252 (5%) Strand=Plus/Plus Query 1 ATGAGTATTAAAAAATGTGTTGTATTGATGGTGGTGGTGTTGGTAGTTTTGGTGGCTATG 60 |||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||| Sbjct 1 ATGAGTCTTAAAAAATGTGTTGTATTGATGGTGGTGGTGTTGGTAGTTATGGTTGCTATG 60 Query 61 GTAGAAGAAGTAGAAGGGCGTTCAACCCCATATGGTAGATGCATGGACCTTTGC-ATGAC 119 ||||||||||||||||||| |||| |||| || |||||||||||||||| | ||| Sbjct 61 GTAGAAGAAGTAGAAGGGCTTTCA------TATGCTACATGCATGGACCTTTGCGA-GAC 113 Query 120 CAAGTGCAACCttttttttACACATCCGGAAAAATACTGTAGAGATAAATGTAATCGCAA 179 |||||| ||| |||||||||||||||| ||||||||||||| |||||||||| | ||||| Sbjct 114 CAAGTGTAACTTTTTTTTTACACATCCAGAAAAATACTGTAAAGATAAATGTGACCGCAA 173 Query 180 ATGTCACAGACTTTA-TCCATCTCAATCATCCCAGATGGA-ATCAATAGGAATGAGAAAC 237 ||||| |||||| | || | ||||||||||||||||||| | | |||| |||||||||| Sbjct 174 ATGTCGTAGACTTCAGTC-AGCTCAATCATCCCAGATGGAGA-CTATAGAAATGAGAAAC 231 Query 238 ATAAATGGGTAG 249 |||||||||||| Sbjct 232 ATAAATGGGTAG 243 > AT1G53285.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Plant thionin family protein (TAIR:AT1G53282.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:19869560-19870095 REVERSE LENGTH=439 Length=439 Score = 220 bits (119), Expect = 4e-57 Identities = 201/238 (84%), Gaps = 16/238 (7%) Strand=Plus/Plus Query 10 AAAAAATGTGTTGTATTGATGGTGGTGGTGTTGGTAGTTTTGGTGGCTATGGTAGAAGAA 69 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || Sbjct 2 AAAAAATGTGTTGTATTGATGGTGGTGGTGTTGGTAGTTATGGTGGCTATGGTAGATGAC 61 Query 70 GTAGAAGGGCGTTCAACCCCATATGGTAGATGCATGGACCTTTGC-ATGACCAAGTGCAA 128 || |||||||| | | ||||| || ||||||||| |||||| | ||||||||| || Sbjct 62 GTTGAAGGGCGG-CTTTC--ATATGCTACATGCATGGATCTTTGCGA-GACCAAGTGTAA 117 Query 129 CCttttttttACACATCCGGAAAAATACTGTAGAGATAAATGTAATCGCAAATGTCACAG 188 | |||||||||||||||| ||||||||||||| |||||||||||| |||||||||| || Sbjct 118 CTTTTTTTTTACACATCCAGAAAAATACTGTAAAGATAAATGTAACCGCAAATGTCGTAG 177 Query 189 ACTTTATCCATCTCAATCATCCCAGATGGA-ATCAATAGGAATGAGAAACATAAATGG 245 |||| | ||| | || || || |||| | | ||||||||||||||||||||||| Sbjct 178 ACTTCA---ATC--A-TC-TC--AGGTGGAGA-CTATAGGAATGAGAAACATAAATGG 225 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 11310243525 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5