BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314657
Length=450
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53325.1 | Symbols: | F-box associated ubiquitination effec... 656 0.0
AT1G58090.1 | Symbols: | F-box and associated interaction doma... 529 1e-149
AT5G37040.1 | Symbols: | F-box family protein | chr5:14639135-... 86.1 3e-16
> AT1G53325.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr1:19895227-19895733 REVERSE LENGTH=507
Length=507
Score = 656 bits (355), Expect = 0.0
Identities = 419/450 (93%), Gaps = 4/450 (1%)
Strand=Plus/Plus
Query 3 GCTCGATTTTTCGAAAGAGACATTAAAGATGTTTTGTATTCTACCGTGTAAGGCGaaaaa 62
|||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||| ||
Sbjct 60 GCTCGATTTTTCCAAAGAGACATTAAAGATGTTCTGTATTCTACCATGTAAGGCGAAGAA 119
Query 63 aaGTTCTACACATACTCGTATCCTCTCTATTTACAAGGGAGATCGGTTTTCAGTGATGGA 122
|||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 120 AAGTACTACTCATACTCGTATCCTCTCTATTTACAAAGGAGATCGGTTTTCAGTGATGGA 179
Query 123 ACAATGCAAAAGAACAAGGGAGATTGAGATTTGGGTGACAAAGAATAAAATTGGTAATGG 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 ACAATGCAAAAGAACAAGGGAGATTGAGATTTGGGTGACAAAGAATAAAATTGGTAATGG 239
Query 183 GGATGATGGAGACGATGTCGTGTGGATTAAGTTCATGACTGTCTCAATACCTAACTTCCC 242
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GGATGATGGAAACGATGTTGTGTGGATTAAGTTCATGACTGTCTCAATACCTAACTTCCC 299
Query 243 CTTGGTACTTAATCACTA-TTCTACAAGTTACTTCGTCGATGATAATATCTATGGGAAGA 301
| |||||||| ||| || |||||||||||||||||||||||||| ||||| ||||||||
Sbjct 300 CATGGTACTTTGTCA-TAATTCTACAAGTTACTTCGTCGATGATAGTATCTCTGGGAAGA 358
Query 302 GCTTCGTTCTATGTTGTCCTACCAAGAAACCTAAACAAGCTTGGGT-TCATATTGTGAGG 360
|||||||| |||||| | |||||||||||||||||||||||||||| | |||||||||||
Sbjct 359 GCTTCGTTTTATGTTTTTCTACCAAGAAACCTAAACAAGCTTGGGTCT-ATATTGTGAGG 417
Query 361 GGAGATCTGTACAAAAAGATTAAGATAGATGAAGTGGTATGCAAGTTTGAATCCTCTGTC 420
|||||||||| |||||||||||||||||||||||| ||||| | ||| |||||| || |
Sbjct 418 GGAGATCTGTGCAAAAAGATTAAGATAGATGAAGTTGTATGTACGTTCCAATCCTGTGCC 477
Query 421 TTTGTTCCCAGTTTGATCACCATTCCTTGA 450
| |||||||||||||||| |||||||||||
Sbjct 478 TATGTTCCCAGTTTGATCTCCATTCCTTGA 507
> AT1G58090.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:21510510-21511625 FORWARD LENGTH=1116
Length=1116
Score = 529 bits (286), Expect = 1e-149
Identities = 406/462 (88%), Gaps = 15/462 (3%)
Strand=Plus/Plus
Query 1 ATGCTCGATTTTTCGAAAGAGACATTAAAGA-T-----G---TTTTGTATTCTACCGTGT 51
|||||||||||||||||||||| | ||||| | | |||||| || ||||||||
Sbjct 658 ATGCTCGATTTTTCGAAAGAGATAGAAAAGAGTCGAAAGACCTTTTGTGTTTTACCGTGT 717
Query 52 AAGGCGaaaaaaaGTTCTACACATACTCGTATCCTCTCTATTTACAAGGGAGATCGGTTT 111
|||| | |||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 718 AAGGGGGAAAAAAGTACTACACATACTCGTATCCTCTCGATTTACAAGGGAGATCGGTTT 777
Query 112 TCAGTGATGGAACAATGCAAAAGAACAAGGGAGATTGAGATTTGGGTGACAAAGAATAAA 171
|||||| | ||||||| ||||| ||||||||||||||||||||||||||||||| || ||
Sbjct 778 TCAGTGTTAGAACAATCCAAAAAAACAAGGGAGATTGAGATTTGGGTGACAAAGGATCAA 837
Query 172 ATTGGTAATGGGGATGATGGAGACGATGTCGTGTGGATTAAGTTCATGACTGTCTCAATA 231
|||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||| |
Sbjct 838 ATTGGTAACGGGGATGATGGAGACGATGTGGTGTGGATTAAGTTCATGACAGTCTCAAGA 897
Query 232 CCTAACTTCCCCTTGGTACTTAATCACTAT-TCTACAAGTTACTTCGTCGATGATAATAT 290
||| |||||||| | |||||| | || || |||||||||||||| |||||| || ||||
Sbjct 898 CCTGACTTCCCCATATTACTTAGTTAC-ATCTCTACAAGTTACTTTGTCGATAATGATAT 956
Query 291 CTATGGGAAGAGCTTCGTTCTATGTTGTCCTACCAAGAAACCTAAA-CAAGCTTGGGT-T 348
| ||||||||||||| ||||| |||||||||| ||||| ||||||| || |||||||| |
Sbjct 957 CCATGGGAAGAGCTTTGTTCTGTGTTGTCCTAGCAAGAGACCTAAAGCA-GCTTGGGTGT 1015
Query 349 CATATTGTGAGGGGAGATCTGTACAAAAAGATTAAGATAGATGAAGTGGTATGCAAGTTT 408
||||||||||||||||| ||| ||||||||||||||||||| ||||| |||| |||||
Sbjct 1016 -ATATTGTGAGGGGAGATTTGTGCAAAAAGATTAAGATAGATCAAGTGCTATGTGAGTTT 1074
Query 409 GAATCCTCTGTCTTTGTTCCCAGTTTGATCACCATTCCTTGA 450
|||||||||||| ||||||||||||||||||||||||||||
Sbjct 1075 CAATCCTCTGTCTATGTTCCCAGTTTGATCACCATTCCTTGA 1116
> AT5G37040.1 | Symbols: | F-box family protein | chr5:14639135-14639934
FORWARD LENGTH=729
Length=729
Score = 86.1 bits (46), Expect = 3e-16
Identities = 69/79 (87%), Gaps = 6/79 (8%)
Strand=Plus/Plus
Query 378 GATTAAGATAGATGAAGTGGTA-T-GC-AAGTTTGA--A-TCCTCTGTCTTTGTTCCCAG 431
|||||||||||||| ||| ||| | || |||| ||| | || |||||||||||||||||
Sbjct 651 GATTAAGATAGATGGAGTTGTATTCGCTAAGTCTGATCAGTCATCTGTCTTTGTTCCCAG 710
Query 432 TTTGATCACCATTCCTTGA 450
|||||||||||||||||||
Sbjct 711 TTTGATCACCATTCCTTGA 729
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21414061074
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5