BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314659
Length=1017
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53345.1 | Symbols: | unknown protein; INVOLVED IN: biologi... 1526 0.0
> AT1G53345.1 | Symbols: | unknown protein; INVOLVED IN: biological_process
unknown; LOCATED IN: endomembrane system; EXPRESSED
IN: 8 plant structures; EXPRESSED DURING: 4 anthesis,
F mature embryo stage, petal differentiation and expansion stage,
E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT5G09580.1);
Has 201 Blast hits to 201 proteins in 75 species:
Archae - 6; Bacteria - 102; Metazoa - 2; Fungi - 0; Plants
- 47; Viruses - 7; Other Eukaryotes - 37 (source: NCBI BLink).
| chr1:19902495-19903700 FORWARD LENGTH=1206
Length=1206
Score = 1526 bits (826), Expect = 0.0
Identities = 938/992 (95%), Gaps = 7/992 (1%)
Strand=Plus/Plus
Query 30 GAAGAAGTTGGCTGTTCTTTACCATTATCCTTGCCATGACGGTGTTTTCGCCGCTTTAGC 89
||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 81 GAAGAAGATGGCTGTGCTTTACCATTATCCTTGCCATGACGGTGTTTTCGCAGCTTTAGC 140
Query 90 TGCTCATCTCTACTTCTCAGCAAAGTCAATCCCTTCATTGTTCTTCCCCAACACAGTCTA 149
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 141 TGCTCATCTCTACTTCTCAGCAAAGTCAATCCCTTCACTGTTCTTCCCCAACACAGTCTA 200
Query 150 TTCTCCAATCACAATCAACCAACTTCCACTTCAAGAAATCAGTCATCTTTATCTTCTTGA 209
||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||
Sbjct 201 CTCTCCAATCACAATCAACCAACTTCCACTTCAAGACATCAGTCATCTCTATCTTTTTGA 260
Query 210 TTTCACTGGACCTCCTGGTTTTGTTTACCAAGTCTCTCCTAAAGTCGACAATGTGGTGAT 269
||||||||||||||| ||||| ||| |||||||||||||||||||||||||||| |||||
Sbjct 261 TTTCACTGGACCTCCAGGTTTCGTTCACCAAGTCTCTCCTAAAGTCGACAATGTCGTGAT 320
Query 270 CCTCGATCATCATAAAACCGCTATTGAGAGTC-TAGGTGATGTCTCTTTGACTTGCAAGA 328
||||||||| ||||||||||||||||| || | |||||||||||||||||||||||||||
Sbjct 321 CCTCGATCACCATAAAACCGCTATTGATAG-CTTAGGTGATGTCTCTTTGACTTGCAAGA 379
Query 329 ACGTTACTAGTGTTTTGGATATAGAGAGAAGTGGTGCGACTATTGCGTTTGATTATTTTA 388
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 380 ACGTTACTAGTGTTTTGGATATAGAGAGAAGTGGTGCGACTATTGCGTTTGACTATTTTA 439
Query 389 CTCAGAAGTTGGTTGAAGAATGTAGAGGAAGTTGCAAGGAGATGAATGATTTTAAGAGAA 448
|||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||
Sbjct 440 CTCAGAAGTTGGTTGAAGAAAGTAGAGGAAGTTGCAAAGAGATGAATGATTTCAAGAGAA 499
Query 449 TGAGACGTGTTTTCGAGTATATTGAAGACGCGGATATATGGAAGTGGGAGTTACCAGAGA 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 500 TGAGACGTGTTTTCGAGTATATTGAAGACGCGGATATATGGAAGTGGGAGTTACCAGAGA 559
Query 509 GTAAAGCATTT-AACAGTGGAATCTTGGACTTGAAGATTGAATACGACTTTAATCAGAAT 567
| ||||| ||| ||||||||||| |||||||| ||||||||||||||||| ||| ||||
Sbjct 560 GCAAAGC-TTTCAACAGTGGAATATTGGACTTAAAGATTGAATACGACTTCAATAAGAAC 618
Query 568 CAATCATTGTTTGATCAGCTACTCTCTTTGGATCATGAAAGTGTGATCAACAGAGGAAAA 627
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 619 CAATCTTTGTTTGATCAGCTACTCTCATTGGATCATGAAAGTGTGATCAACAGAGGAAAA 678
Query 628 CAGAGTTTGTCTAAGAAACATAAACGGATTCACGAGGCGTTGGAAAAGTCATATGAGATT 687
||||||||||| ||||||||||||| ||||||||||| ||||||| ||||||||||||||
Sbjct 679 CAGAGTTTGTCCAAGAAACATAAACTGATTCACGAGGTGTTGGAACAGTCATATGAGATT 738
Query 688 GTTCTTGGAGGTGACGAAGAGTTTGGACGGTGTTTAGCTGTAAATGCAGATGAGATTGCA 747
|||||||||||||| || ||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 739 GTTCTTGGAGGTGATGAGGAGTTTGGACGGTGTTTAGCTGTAAATGCTGATGAGATTACA 798
Query 748 GTGCTTAGAAGCGAATTAGGTAATCAATTGGCTGCA-AAGAGCAAGAATCTGAATTTACG 806
| |||||||||||| ||||| ||||||||||||| | ||||| |||||||||| ||||||
Sbjct 799 GAGCTTAGAAGCGAGTTAGGGAATCAATTGGCTG-AGAAGAGTAAGAATCTGAGTTTACG 857
Query 807 AGGTATTGGAGCTGTTGTTTACAGAGTTCCTGAGCTTGGGGATGAAAACAAACTGAAAAT 866
|||| |||||||||||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 858 AGGTGTTGGAGCTGTTGTTTACAGAGTTCCTGAGCTTGGAGATGAGAATAAACTGAAAAT 917
Query 867 AAGTTTGAGGAGTGTTGCAGAAGAAGACACAACACCGGTTTCTCAGAGATTCGGAGGTGG 926
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 918 AAGTTTGAGGAGTGTTGCAGAAGAAGACACAACACCGGTTTCACAGCGATTCGGAGGTGG 977
Query 927 TGGTCATAAAAACGCAAGCTCCTTCTTGTTAAACTCCATGGAGTTCGAACAATGGAAGGT 986
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 978 TGGTCATAAAAACGCAAGCTCCTTCTTGTTAAACTCCATGGAGTTCGAGCAATGGAAGGT 1037
Query 987 GAA-TAGAAACTCTTCTAATACATTAAACTAG 1017
||| |||||||||||||| |||||||||||||
Sbjct 1038 GAAATAGAAACTCTTCTACTACATTAAACTAG 1069
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49832273824
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5